Co-expression analysis

Gene ID	1616802_s_at
Gene name
Homology with Arabidopsis	Similar to At2g43060: transcription factor (HF=2e+0)
Module size	6 genes
NF	0.34
%ile	48.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.3	0.97	1616802_s_at	CF200896.1	-	-	2e+0	At2g43060	transcription factor	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.97	1618481_at	CF213085	hypothetical protein LOC100266840	-	1e-13	At1g65320	CBS domain-containing protein	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.98	1606933_a_at	CB007886	-	-	1e-20	At1g01360	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1617158_at	CB920605	hypothetical protein LOC100251931	-	4e-17	At5g19630	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.97	1612828_at	BQ799707	hypothetical protein LOC100241128	-	3e-14	At3g60340	palmitoyl protein thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.97	1618964_at	CB339459	hypothetical protein LOC100266690	-	1e-12	At3g03100	NADH:ubiquinone oxidoreductase family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.5	91.9	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
2.4	91.3	GSM147685	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	14
2.4	91.3	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
2.4	91.3	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM436420	V. riparia (VR, PI588259) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.3	90.7	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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