Co-expression analysis

Gene ID	1616784_at
Gene name
Homology with Arabidopsis	Similar to At3g19640: magnesium transporter CorA-like family protein (MRS2-3) (HF=5e-45)
Module size	7 genes
NF	0.30
%ile	43.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	75.2	0.95	1616784_at	CD007778	-	-	5e-45	At3g19640	magnesium transporter CorA-like family protein (MRS2-3)	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.97	1609123_at	CF215118	hypothetical protein LOC100259150	-	2e-55	At1g09630	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.96	1616358_at	BQ798612	MLO14 protein	-	1e+0	At5g27170	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1608672_s_at	CK138170.1	-	-	6e-33	At2g21580	40S ribosomal protein S25 (RPS25B)	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.97	1618060_at	CF513542	hypothetical protein LOC100252303	-	5e-41	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.97	1618216_at	CF415755	hypothetical protein LOC100259302	-	5e-47	At5g08590	SNRK2.1 (SNF1-RELATED PROTEIN KINASE 2.1)	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.96	1613284_s_at	CF607046	hypothetical protein LOC100261107	-	6e-1	At4g31030	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	98.2	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.5	97.5	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
3.7	96.2	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.6	96.0	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
3.6	96.0	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.5	95.7	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.5	95.7	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1	94.6	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1	94.6	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0	94.2	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage