Co-expression analysis

Gene ID	1616772_at
Gene name	hypothetical protein LOC100244510
Homology with Arabidopsis	Similar to At1g20670: DNA-binding bromodomain-containing protein (HF=1e-6)
Module size	11 genes
NF	0.23
%ile	32.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	85.0	0.95	1616772_at	CD799675	hypothetical protein LOC100244510	-	1e-6	At1g20670	DNA-binding bromodomain-containing protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1611857_at	CA810729	hypothetical protein LOC100261569	-	3e-21	At3g50690	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1607858_at	CD719873	hypothetical protein LOC100249628	-	1e-77	At4g10730	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.97	1617653_at	CA818371	hypothetical protein LOC100260671	-	5e-2	At4g39280	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.97	1613733_at	CB345957	hypothetical protein LOC100243231	-	1e-6	At5g59210	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.97	1622000_s_at	CF604800	hypothetical protein LOC100242169	-	1e+0	At3g27329	-	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.97	1610777_at	CD797701	hypothetical protein LOC100263956	-	2e-42	At3g13670	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1609918_at	CF414641	hypothetical protein LOC100259885	-	1e-1	At3g55460	SCL30	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.95	1618240_at	CF211533	hypothetical protein LOC100258476	-	3e-13	At1g01650	aspartic-type endopeptidase/ peptidase	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.96	1607370_at	CF513264	hypothetical protein LOC100264871	-	8e-124	At3g52140	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.96	1611024_at	CB006106	-	-	6e+0	At5g03310	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.3	90.7	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.0	88.2	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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