Co-expression analysis

Gene ID	1616710_at
Gene name	hypothetical protein LOC100248331
Homology with Arabidopsis	Similar to At3g56370: leucine-rich repeat transmembrane protein kinase, putative (HF=2e-8)
Module size	6 genes
NF	0.49
%ile	73.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.96	1616710_at	CF515503	hypothetical protein LOC100248331	-	2e-8	At3g56370	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.95	1615246_at	CF371892	hypothetical protein LOC100247907	-	7e-1	At4g28640	IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11)	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.96	1610729_at	CD798441	hypothetical protein LOC100257029	-	3e+0	At5g44020	acid phosphatase class B family protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.96	1612479_at	CF415448	hypothetical protein LOC100243093	-	1e-8	At1g01610	GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4)	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.96	1608919_at	CD800784	hypothetical protein LOC100259569	-	7e-2	At2g32670	ATVAMP725	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.96	1608211_at	CD798213	hypothetical protein LOC100247578	-	6e+0	At3g55490	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	93.4	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
1.8	86.0	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.8	86.0	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.8	86.0	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436361	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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