CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1616706_at

Gene name hypothetical LOC100265979
Homology with Arabidopsis Similar to At4g12400: stress-inducible protein, putative (HF=8e-11)

Module size 16 genes

NF 0.25

%ile 35.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.94 99.3 0.97 1616706_at CF207563 hypothetical LOC100265979 - 8e-11 At4g12400 stress-inducible protein, putative O.I. H.G. S.X.
0.61 83.2 0.97 1618545_a_at CB346750 hypothetical LOC100265979 - 2e-50 At1g12270 stress-inducible protein, putative O.I. H.G. S.X.
0.41 58.7 0.98 1619013_at CF514808 hypothetical protein LOC100242671 - 3e-32 At1g03260 - O.I. H.G. S.X.
0.39 54.9 0.98 1622731_at CF403287 hypothetical protein LOC100257054 - 8e-12 At3g55070 - O.I. H.G. S.X.
0.36 50.7 0.98 1614555_at CF518554 hypothetical protein LOC100254478 - 2e-13 At5g45300 BMY2 (BETA-AMYLASE 2) O.I. H.G. S.X.
0.36 50.7 0.98 1613905_at CF210463 hypothetical protein LOC100254141 - 3e-13 At5g08160 ATPK3 O.I. H.G. S.X.
0.32 43.1 0.98 1613154_at CB346750 hypothetical LOC100265979 - 2e-50 At1g12270 stress-inducible protein, putative O.I. H.G. S.X.
0.24 28.7 0.98 1615024_at CB911127 hypothetical protein LOC100261826 - 2e-27 At2g05840 PAA2 (20S PROTEASOME SUBUNIT PAA2) O.I. H.G. S.X.
0.24 28.7 0.98 1621155_at BQ794745 hypothetical protein LOC100248478 - 8e-34 At2g30260 U2B'' (U2 small nuclear ribonucleoprotein B) O.I. H.G. S.X.
0.23 27.5 0.98 1613731_at CF513972 hypothetical protein LOC100248748 - 2e-5 At5g63840 RSW3 (RADIAL SWELLING 3) O.I. H.G. S.X.
0.22 25.6 0.98 1618759_at CB348270 hypothetical protein LOC100256813 - 1e+0 At1g76010 nucleic acid binding O.I. H.G. S.X.
0.19 20.9 0.97 1616468_at BQ797683 hypothetical protein LOC100246828 - 5e-66 At1g63830 proline-rich family protein O.I. H.G. S.X.
0.18 19.4 0.98 1616450_at BQ797532 hypothetical protein LOC100264578 - 3e-23 At1g48790 mov34 family protein O.I. H.G. S.X.
0.14 14.4 0.98 1614110_s_at CD801616 cullin 1 - 2e-19 At4g02570 ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) O.I. H.G. S.X.
0.14 14.4 0.98 1608425_at CB910322 hypothetical protein LOC100267018 - 1e-1 At5g67510 60S ribosomal protein L26 (RPL26B) O.I. H.G. S.X.
0.11 11.3 0.98 1613460_at CB979154 hypothetical protein LOC100260001 - 2e+0 At5g43420 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.7 93.0 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
2.6 92.5 GSM147709 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 38
2.4 91.3 GSM147729 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 58
2.4 91.3 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM147714 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 43
2.2 89.9 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
2.2 89.9 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
2.2 89.9 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
2.2 89.9 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
2.1 89.1 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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