Co-expression analysis

Gene ID 1616682_at
Gene name hypothetical protein LOC100266059
Homology with ArabidopsisSimilar to At4g18030: dehydration-responsive family protein (HF=9e-37)
Module size 6 genes
NF 0.42
%ile 63.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6384.30.971616682_atCF512457hypothetical protein LOC100266059-9e-37At4g18030dehydration-responsive family proteinO.I.H.G.S.X.
0.5072.70.971606871_atCB970216hypothetical protein LOC100265666-1e-3At4g11090unknown proteinO.I.H.G.S.X.
0.4464.10.971616046_atCD012880--9e-6At1g08280glycosyl transferase family 29 protein / sialyltransferase family proteinO.I.H.G.S.X.
0.3853.60.971613468_atCF405048hypothetical protein LOC100250231-3e-55At3g04730IAA16O.I.H.G.S.X.
0.3548.50.971617344_atCF513963hypothetical protein LOC100256748-1e-22At1g60800NIK3 (NSP-INTERACTING KINASE 3)O.I.H.G.S.X.
0.2022.40.971608769_atBM437199hypothetical protein LOC100253272-5e+0At5g44306unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.099.3GSM287904Red soft berry C31 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
6.398.8GSM287900Red soft berry C15 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
5.198.1GSM287901Red soft berry C16 from plant 1 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
4.196.9GSM287897Red soft berry C29 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.595.7GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.993.8GSM287898Red soft berry B14 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.692.5GSM147708Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation37Link to GEO
2.491.3GSM287902Red soft berry C30 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.491.3GSM147741Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation70Link to GEO
2.390.7GSM287899Red soft berry C13 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.14867.1.A1_at, orthologous to the query gene, 1616682_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9199.0Zm.14867.1.A1_atAt4g18030--2e-9At4g00750dehydration-responsive family proteinO.I.H.G.S.X.
0.8094.0Zm.14867.2.A1_atAt4g18030cyclic nucleotide-gated ion channel 14-1e-6At5g57940ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5)O.I.H.G.S.X.
0.7792.1Zm.3568.2.A1_atAt4g18030--2e+0At5g50760auxin-responsive family proteinO.I.H.G.S.X.
0.4759.9Zm.6713.1.A1_atAt4g18030ATP-citrate synthase-1e-36At1g09430ACLA-3O.I.H.G.S.X.
0.2622.7Zm.10199.1.A1_atAt4g18030hypothetical protein LOC100193850-2e-5At1g06890transporter-relatedO.I.H.G.S.X.
0.2318.6Zm.17363.1.S1_atAt4g18030--2e-2At1g72080unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



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