Co-expression analysis

Gene ID	1616682_at
Gene name	hypothetical protein LOC100266059
Homology with Arabidopsis	Similar to At4g18030: dehydration-responsive family protein (HF=9e-37)
Module size	6 genes
NF	0.42
%ile	63.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	0.97	1616682_at	CF512457	hypothetical protein LOC100266059	-	9e-37	At4g18030	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1606871_at	CB970216	hypothetical protein LOC100265666	-	1e-3	At4g11090	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1616046_at	CD012880	-	-	9e-6	At1g08280	glycosyl transferase family 29 protein / sialyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.97	1613468_at	CF405048	hypothetical protein LOC100250231	-	3e-55	At3g04730	IAA16	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.97	1617344_at	CF513963	hypothetical protein LOC100256748	-	1e-22	At1g60800	NIK3 (NSP-INTERACTING KINASE 3)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.97	1608769_at	BM437199	hypothetical protein LOC100253272	-	5e+0	At5g44306	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.0	99.3	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.3	98.8	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.1	98.1	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.1	96.9	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.5	95.7	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.4	91.3	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.3	90.7	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the wheat gene, Ta.6370.1.S1_at, orthologous to the query gene, 1616682_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	92.4	Ta.6370.1.S1_at	At4g18030	-	-	6e-10	At1g26850	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	TaAffx.91607.1.A1_at	At4g18030	-	-	7e-2	At4g24370	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	75.5	TaAffx.708.1.A1_at	At4g18030	-	-	3e-1	At1g01630	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	O.I.	H.G.	S.X.	Please select
0.51	73.0	Ta.24174.1.A1_at	At4g18030	-	-	2e+0	At4g27890	nuclear movement family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.735.1.S1_at	At4g18030	-	-	2e-66	At3g62120	tRNA synthetase class II (G, H, P and S) family protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.11718.1.A1_at	At4g18030	-	-	8e+0	At3g43950	phosphotransferase, alcohol group as acceptor	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.22513.1.S1_at	At4g18030	-	-	5e-5	At1g22910	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.5073.1.S1_at	At4g18030	-	-	3e-2	At2g26970	exonuclease family protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.6931.1.S1_at	At4g18030	-	-	7e-54	At2g26990	FUS12 (FUSCA 12)	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.25661.1.A1_at	At4g18030	-	-	5e+0	At5g26622	beta-galactosidase	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.1307.1.S1_at	At4g18030	-	-	3e-19	At2g33840	tRNA synthetase class I (W and Y) family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.25868.1.S1_at	At4g18030	-	-	9e-9	At3g22990	LFR (LEAF AND FLOWER RELATED)	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.2319.2.S1_a_at	At4g18030	-	-	8e+0	At4g08270	-	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.20773.1.S1_at	At4g18030	-	-	3e+0	At5g67080	MAPKKK19	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.25868.1.S1_a_at	At4g18030	-	-	9e-9	At3g22990	LFR (LEAF AND FLOWER RELATED)	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.6406.1.S1_at	At4g18030	-	-	2e-5	At1g29370	kinase-related	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.3584.1.S1_at	At4g18030	-	-	2e+0	At5g25102	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.21368.1.S1_at	At4g18030	-	-	4e-1	At3g02480	ABA-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.6255.1.S1_at	At4g18030	-	-	3e-16	At5g61970	signal recognition particle-related / SRP-related	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.8121.1.S1_at	At4g18030	-	-	3e+0	At5g64720	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.11860.1.S1_at	At4g18030	-	-	3e-19	At3g09180	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.10116.1.S1_a_at	At4g18030	-	-	2e-45	At1g17470	ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.59896.1.A1_at	At4g18030	-	-	1e+0	At4g26950	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage