Co-expression analysis

Gene ID	1616682_at
Gene name	hypothetical protein LOC100266059
Homology with Arabidopsis	Similar to At4g18030: dehydration-responsive family protein (HF=9e-37)
Module size	6 genes
NF	0.42
%ile	63.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	0.97	1616682_at	CF512457	hypothetical protein LOC100266059	-	9e-37	At4g18030	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1606871_at	CB970216	hypothetical protein LOC100265666	-	1e-3	At4g11090	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1616046_at	CD012880	-	-	9e-6	At1g08280	glycosyl transferase family 29 protein / sialyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.97	1613468_at	CF405048	hypothetical protein LOC100250231	-	3e-55	At3g04730	IAA16	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.97	1617344_at	CF513963	hypothetical protein LOC100256748	-	1e-22	At1g60800	NIK3 (NSP-INTERACTING KINASE 3)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.97	1608769_at	BM437199	hypothetical protein LOC100253272	-	5e+0	At5g44306	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.0	99.3	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.3	98.8	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.1	98.1	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.1	96.9	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.5	95.7	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.4	91.3	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.3	90.7	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.3119.1.A1_at, orthologous to the query gene, 1616682_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	97.8	Ptp.3119.1.A1_at	At4g18030	-	-	4e-11	At4g18030	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	Ptp.1333.1.S1_at	At4g18030	-	-	7e-1	At1g31510	F-box family protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	Ptp.1640.1.S1_at	At4g18030	chorismate synthase /// chorismate synthase	-	5e-109	At1g48850	EMB1144 (embryo defective 1144)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.10823.1.S1_s_at	At4g18030	cc-nbs-lrr resistance protein	-	2e+1	At5g21920	YGGT family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	Ptp.659.1.S1_at	At4g18030	hypothetical protein	-	5e-14	At3g12800	SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.58	84.2	Ptp.4556.1.S1_at	At4g18030	hypothetical protein	-	3e-29	At2g05990	MOD1 (MOSAIC DEATH 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.85796.1.S1_at	At4g18030	-	-	5e+0	At5g22791	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	Ptp.4285.1.S1_at	At4g18030	-	-	2e-17	At2g43360	BIO2 (BIOTIN AUXOTROPH 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	Ptp.5753.1.S1_x_at	At4g18030	hypothetical protein	-	3e-36	At4g22220	ISU1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	Ptp.6678.1.S1_at	At4g18030	hypothetical protein	-	2e+0	At1g34910	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	PtpAffx.105751.1.S1_at	At4g18030	hypothetical protein	-	9e-49	At1g08190	vacuolar assembly protein, putative (VPS41)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.49	75.7	Ptp.3817.1.S1_at	At4g18030	hypothetical protein	-	1e+0	At3g11620	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.49	75.7	Ptp.1680.1.A1_at	At4g18030	-	-	1e+0	At3g12900	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	Ptp.2147.2.S1_at	At4g18030	glutaredoxin S14	-	2e-9	At3g54900	CXIP1 (CAX INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	Ptp.2840.1.S1_at	At4g18030	-	-	5e-13	At2g04340	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.3991.1.S1_at	At4g18030	-	-	7e-81	At5g19050	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.35503.1.S1_at	At4g18030	-	-	1e+0	At5g27020	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.3039.2.S1_at	At4g18030	hypothetical protein	-	1e-3	At5g16760	inositol 1,3,4-trisphosphate 5/6-kinase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	Ptp.1714.1.A1_a_at	At4g18030	hypothetical protein	-	2e+0	At4g03505	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	Ptp.1728.1.S1_x_at	At4g18030	f-box family protein	-	5e-22	At5g49980	AFB5 (Auxin F-Box protein 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	Ptp.1452.1.S1_at	At4g18030	-	-	8e+0	At5g12140	ATCYS1 (A. thaliana cystatin-1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	Ptp.131.1.S1_at	At4g18030	hypothetical protein	-	7e-79	At1g23190	phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	Ptp.939.3.A1_at	At4g18030	-	-	3e+0	Atcg00905	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	Ptp.4119.1.S1_at	At4g18030	hypothetical protein	-	1e-9	At4g00740	dehydration-responsive protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.6297.1.S1_at	At4g18030	hypothetical protein	-	2e-3	At2g42880	ATMPK20	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.39317.1.S1_at	At4g18030	hypothetical protein	-	9e-11	At4g00570	malate oxidoreductase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	Ptp.1153.2.S1_at	At4g18030	-	-	4e-1	At1g13870	DRL1 (DEFORMED ROOTS AND LEAVES 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	Ptp.551.1.S1_at	At4g18030	hypothetical protein	-	3e-33	At1g07510	ftsh10 (FtsH protease 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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