Co-expression analysis

Gene ID	1616682_at
Gene name	hypothetical protein LOC100266059
Homology with Arabidopsis	Similar to At4g18030: dehydration-responsive family protein (HF=9e-37)
Module size	6 genes
NF	0.42
%ile	63.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	0.97	1616682_at	CF512457	hypothetical protein LOC100266059	-	9e-37	At4g18030	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1606871_at	CB970216	hypothetical protein LOC100265666	-	1e-3	At4g11090	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1616046_at	CD012880	-	-	9e-6	At1g08280	glycosyl transferase family 29 protein / sialyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.97	1613468_at	CF405048	hypothetical protein LOC100250231	-	3e-55	At3g04730	IAA16	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.97	1617344_at	CF513963	hypothetical protein LOC100256748	-	1e-22	At1g60800	NIK3 (NSP-INTERACTING KINASE 3)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.97	1608769_at	BM437199	hypothetical protein LOC100253272	-	5e+0	At5g44306	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.0	99.3	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.3	98.8	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.1	98.1	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.1	96.9	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.5	95.7	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.4	91.3	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.3	90.7	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the rice gene, Os10g0569300, orthologous to the query gene, 1616682_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.8	Os10g0569300	At4g18030	-	Putative methyltransferase DUF248 family protein	3e-10	At1g26850	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	Os01g0870100	At4g18030	-	DMI1 protein	1e-63	At5g49960	binding / catalytic	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	Os03g0655600	At4g18030	-	FAR1 domain containing protein	5e-1	At1g47970	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	Os06g0693700	At4g18030	-	-	2e-1	At5g02570	histone H2B, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.36	44.0	Os11g0515500	At4g18030	-	Conserved hypothetical protein	1e-1	At3g26810	AFB2 (AUXIN SIGNALING F-BOX 2)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.25	24.1	Os04g0643600	At4g18030	-	Cyclic nucleotide-gated channel C (Fragment)	9e-9	At5g57940	ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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