CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1616682_at

Gene name hypothetical protein LOC100266059
Homology with Arabidopsis Similar to At4g18030: dehydration-responsive family protein (HF=9e-37)

Module size 6 genes

NF 0.42

%ile 63.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 84.3 0.97 1616682_at CF512457 hypothetical protein LOC100266059 - 9e-37 At4g18030 dehydration-responsive family protein O.I. H.G. S.X.
0.50 72.7 0.97 1606871_at CB970216 hypothetical protein LOC100265666 - 1e-3 At4g11090 unknown protein O.I. H.G. S.X.
0.44 64.1 0.97 1616046_at CD012880 - - 9e-6 At1g08280 glycosyl transferase family 29 protein / sialyltransferase family protein O.I. H.G. S.X.
0.38 53.6 0.97 1613468_at CF405048 hypothetical protein LOC100250231 - 3e-55 At3g04730 IAA16 O.I. H.G. S.X.
0.35 48.5 0.97 1617344_at CF513963 hypothetical protein LOC100256748 - 1e-22 At1g60800 NIK3 (NSP-INTERACTING KINASE 3) O.I. H.G. S.X.
0.20 22.4 0.97 1608769_at BM437199 hypothetical protein LOC100253272 - 5e+0 At5g44306 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.0 99.3 GSM287904 Red soft berry C31 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
6.3 98.8 GSM287900 Red soft berry C15 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
5.1 98.1 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
4.1 96.9 GSM287897 Red soft berry C29 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.5 95.7 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM287898 Red soft berry B14 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.6 92.5 GSM147708 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 37
2.4 91.3 GSM287902 Red soft berry C30 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.4 91.3 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
2.3 90.7 GSM287899 Red soft berry C13 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.92786.1.S1_at, orthologous to the query gene, 1616682_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.40 57.1 GmaAffx.92786.1.S1_at At4g18030 - - 2e-18 At4g18030 dehydration-responsive family protein O.I. H.G. S.X.
0.61 81.8 GmaAffx.92786.1.S1_s_at At4g18030 - - 2e-18 At4g18030 dehydration-responsive family protein O.I. H.G. S.X.
0.25 32.6 Gma.1144.1.S1_at At4g18030 - - 5e-38 At3g48890 ATMP2 O.I. H.G. S.X.
0.03 5.8 Gma.6257.2.S1_a_at At4g18030 - - 2e-12 At3g03250 UGP (UDP-glucose pyrophosphorylase) O.I. H.G. S.X.
0.02 4.5 GmaAffx.90455.1.A1_s_at At4g18030 - - 3e-26 At5g12110 elongation factor 1B alpha-subunit 1 (eEF1Balpha1) O.I. H.G. S.X.
0.01 3.4 Gma.8888.1.S1_at At4g18030 - - 6e+0 At5g20330 BETAG4 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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