CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1616682_at

Gene name hypothetical protein LOC100266059
Homology with Arabidopsis Similar to At4g18030: dehydration-responsive family protein (HF=9e-37)

Module size 6 genes

NF 0.42

%ile 63.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 84.3 0.97 1616682_at CF512457 hypothetical protein LOC100266059 - 9e-37 At4g18030 dehydration-responsive family protein O.I. H.G. S.X.
0.50 72.7 0.97 1606871_at CB970216 hypothetical protein LOC100265666 - 1e-3 At4g11090 unknown protein O.I. H.G. S.X.
0.44 64.1 0.97 1616046_at CD012880 - - 9e-6 At1g08280 glycosyl transferase family 29 protein / sialyltransferase family protein O.I. H.G. S.X.
0.38 53.6 0.97 1613468_at CF405048 hypothetical protein LOC100250231 - 3e-55 At3g04730 IAA16 O.I. H.G. S.X.
0.35 48.5 0.97 1617344_at CF513963 hypothetical protein LOC100256748 - 1e-22 At1g60800 NIK3 (NSP-INTERACTING KINASE 3) O.I. H.G. S.X.
0.20 22.4 0.97 1608769_at BM437199 hypothetical protein LOC100253272 - 5e+0 At5g44306 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.0 99.3 GSM287904 Red soft berry C31 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
6.3 98.8 GSM287900 Red soft berry C15 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
5.1 98.1 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
4.1 96.9 GSM287897 Red soft berry C29 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.5 95.7 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM287898 Red soft berry B14 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.6 92.5 GSM147708 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 37
2.4 91.3 GSM287902 Red soft berry C30 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.4 91.3 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
2.3 90.7 GSM287899 Red soft berry C13 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g18030, orthologous to the query gene, 1616682_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.63 78.1 At4g18030 827528 dehydration-responsive family protein F:unknown;P:biological_process unknown;C:Golgi apparatus, plasma membrane, plant-type cell wall;PBO O.I. H.G. S.X.
0.40 50.8 At3g61130 825285 GAUT1 (GALACTURONOSYLTRANSFERASE 1) Encodes a protein with putative galacturonosyltransferase activity. O.I. H.G. S.X.
0.38 46.7 At4g02500 827940 XT2 (UDP-XYLOSYLTRANSFERASE 2) Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides. O.I. H.G. S.X.
0.31 33.8 At1g29470 839823 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:Golgi apparatus;OMBFPVA O.I. H.G. S.X.
0.25 22.6 At3g02350 820474 GAUT9 (Galacturonosyltransferase 9) Encodes a protein with putative galacturonosyltransferase activity. O.I. H.G. S.X.
0.10 3.4 At1g26850 839229 dehydration-responsive family protein F:unknown;P:unknown;C:Golgi apparatus, membrane;PBO O.I. H.G. S.X.
0.09 2.8 At1g64650 842773 - F:unknown;P:unknown;C:plasma membrane;BPMOFA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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