Co-expression analysis

Gene ID	1616662_at
Gene name	hypothetical protein LOC100254645
Homology with Arabidopsis	Similar to At3g63380: calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12) (HF=2e-34)
Module size	6 genes
NF	0.09
%ile	16.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.9	0.86	1616662_at	CF404703	hypothetical protein LOC100254645	-	2e-34	At3g63380	calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.94	1608809_at	CF513555	hypothetical protein LOC100267558	-	1e-1	At2g22320	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.94	1620306_at	CF404552	hypothetical protein LOC100267760	-	3e-36	At1g75450	CKX5 (CYTOKININ OXIDASE 5)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.85	1615430_at	CB974810	-	-	4e+0	At1g05930	DNA binding	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.84	1608099_at	CD800698	brassinosteroid-6-oxidase	-	5e-6	At3g30180	BR6OX2 (BRASSINOSTEROID-6-OXIDASE 2)	O.I.	H.G.	S.X.	Please select
0.02	3.2	0.84	1622454_at	CF413990	hypothetical protein LOC100246221	-	2e-1	At1g26630	FBR12 (FUMONISIN B1-RESISTANT12)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	96.4	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.6	96.0	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM287890	Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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