Co-expression analysis

Gene ID	1616660_s_at
Gene name	similar to 60S ribosomal protein L19
Homology with Arabidopsis	Similar to At4g29960: unknown protein (HF=1e+0)
Module size	8 genes
NF	0.62
%ile	88.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	84.7	0.97	1616660_s_at	CF569214.1	similar to 60S ribosomal protein L19	-	1e+0	At4g29960	unknown protein	O.I.	H.G.	S.X.	Please select
0.74	91.0	0.96	1617911_at	BQ796680	hypothetical protein LOC100247972	-	9e-2	At5g53560	CB5-E (CYTOCHROME B5 ISOFORM E)	O.I.	H.G.	S.X.	Please select
0.74	91.0	0.96	1615353_at	CB973179	-	-	4e-12	At4g04614	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.96	1617944_at	CF212780	-	-	6e+0	At5g59760	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.96	1620902_a_at	CD801216	-	-	6e-1	At1g67210	proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.96	1619939_at	CB971326	-	-	2e+1	At5g43430	ETFBETA	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.97	1621749_x_at	CF569214.1	-	-	1e+0	At4g29960	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.96	1611884_at	CF569214.1	-	-	1e+0	At4g29960	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	99.4	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.0	94.2	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.9	93.8	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.9	93.8	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
2.9	93.8	GSM147713	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	42
2.7	93.0	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
2.5	91.9	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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