Co-expression analysis

Gene ID 1616628_at
Gene name hypothetical protein LOC100258493
Homology with ArabidopsisSimilar to At2g02060: transcription factor (HF=4e-3)
Module size 13 genes
NF 0.20
%ile 28.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9299.00.941616628_atCK136902.1hypothetical protein LOC100258493-4e-3At2g02060transcription factorO.I.H.G.S.X.
0.3650.70.961611064_atCF373637hypothetical protein LOC100258224-3e-1At3g17820ATGSKB6O.I.H.G.S.X.
0.2530.50.971619904_atCB974700--8e-42At5g42300UBL5 (UBIQUITIN-LIKE PROTEIN 5)O.I.H.G.S.X.
0.2428.70.961609513_a_atCA817442hypothetical protein LOC100254709-1e+0At3g10120unknown proteinO.I.H.G.S.X.
0.1920.90.961615787_atBQ797242similar to elongation factor 2-2e-168At1g56070LOS1O.I.H.G.S.X.
0.1718.20.971614016_atCB008961hypothetical protein LOC100257566-2e-80At1g32440PKp3 (plastidial pyruvate kinase 3)O.I.H.G.S.X.
0.1718.20.981609322_atCF415305hypothetical protein LOC100244359-2e-32At3g03070NADH-ubiquinone oxidoreductase-relatedO.I.H.G.S.X.
0.1616.70.981620631_atCB339382hypothetical protein LOC100255601-1e-63At1g16700NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putativeO.I.H.G.S.X.
0.1515.60.951608351_atCK138128.1--4e-10At4g29340PRF4 (PROFILIN 4)O.I.H.G.S.X.
0.1212.10.971611216_atCB912018hypothetical protein LOC100262087-4e-126At1g16180TMS membrane family protein / tumour differentially expressed (TDE) family proteinO.I.H.G.S.X.
0.1111.30.971622599_s_atCF212773hypothetical protein LOC100259736-1e-44At1g70600structural constituent of ribosomeO.I.H.G.S.X.
0.1010.30.971609774_s_atCA817625hypothetical protein LOC100258211-2e-34At5g45130RHA1 (RAB HOMOLOG 1)O.I.H.G.S.X.
0.088.50.971607015_atCB346470hypothetical protein LOC100249954-1e-12At3g09860unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.495.5GSM436396V. riparia (VR, PI588259) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM322361genotype: Chardonnay - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.692.5GSM147740Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation69Link to GEO
2.591.9GSM322363genotype: Chardonnay - disease type: Bois Noir infected - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.591.9GSM436367Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO
2.189.1GSM147728Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation57Link to GEO
2.088.2GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO
2.088.2GSM147711Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation40Link to GEO
2.088.2GSM147735Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation64Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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