Co-expression analysis

Gene ID 1616580_at
Gene name hypothetical protein LOC100260322
Homology with ArabidopsisSimilar to At2g28910: CXIP4 (CAX INTERACTING PROTEIN 4) (HF=2e+0)
Module size 6 genes
NF 0.46
%ile 68.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.981616580_atCF206767.1hypothetical protein LOC100260322-2e+0At2g28910CXIP4 (CAX INTERACTING PROTEIN 4)O.I.H.G.S.X.
0.5072.70.981613336_atCB980198hypothetical protein LOC100267659-1e-26At1g75510transcription initiation factor IIF beta subunit (TFIIF-beta) family proteinO.I.H.G.S.X.
0.4666.50.981622694_atCB979125hypothetical protein LOC100245090-2e-28At3g12760-O.I.H.G.S.X.
0.3345.70.981616553_s_atCF202023.1similar to KAK (KAKTUS)-3e-1At1g76220unknown proteinO.I.H.G.S.X.
0.2937.70.981610321_s_atCB980394hypothetical protein LOC100251531-9e-55At1g64230ubiquitin-conjugating enzyme, putativeO.I.H.G.S.X.
0.2530.50.981608223_atCB003799hypothetical protein LOC100257996-2e-15At3g07140GPI transamidase component Gpi16 subunit family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.395.2GSM436368Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.395.2GSM299459D_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.491.3GSM436387Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM147735Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation64Link to GEO
2.390.7GSM299462D_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.289.9GSM299461C_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.289.9GSM299455C_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.289.9GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO
2.088.2GSM147721Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation50Link to GEO
2.088.2GSM147711Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation40Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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