Co-expression analysis

Gene ID 1616578_s_at
Gene name hypothetical protein LOC100256465
Homology with ArabidopsisSimilar to At2g18540: cupin family protein (HF=1e-6)
Module size 17 genes
NF 0.85
%ile 98.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.931616578_s_atCB978574hypothetical protein LOC100256465-1e-6At2g18540cupin family proteinO.I.H.G.S.X.
0.9799.90.961616868_atCB977238hypothetical protein LOC100256467-3e-1At3g52910AtGRF4 (GROWTH-REGULATING FACTOR 4)O.I.H.G.S.X.
0.9499.30.951611316_atCB007329hypothetical protein LOC100266502-1e-1At3g22500ATECP31O.I.H.G.S.X.
0.9499.30.971613815_atBQ793122hypothetical protein LOC100259564-2e-3At1g48130ATPER1O.I.H.G.S.X.
0.9198.80.961607519_atCB976940hypothetical protein LOC100263055-1e-2At2g36640ATECP63 (EMBRYONIC CELL PROTEIN 63)O.I.H.G.S.X.
0.9198.80.951611931_atCF517487hypothetical protein LOC100254405-1e+0At1g04260MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7)O.I.H.G.S.X.
0.9095.60.971617579_atCD713565hypothetical protein LOC100252810-3e-1At1g09760U2A' (U2 small nuclear ribonucleoprotein A)O.I.H.G.S.X.
0.8895.40.941620956_atCB349029hypothetical protein LOC100264933-1e+0At3g46230ATHSP17.4O.I.H.G.S.X.
0.8394.60.971608715_atCB977234hypothetical protein LOC100258268-4e+0At5g10280ATMYB92 (MYB DOMAIN PROTEIN 92)O.I.H.G.S.X.
0.8193.70.961611384_atCB917504hypothetical protein LOC100244040-3e+0At3g51020unknown proteinO.I.H.G.S.X.
0.8093.60.971609832_atCB916843hypothetical protein LOC100267534-2e-8At2g42000plant EC metallothionein-like family 15 proteinO.I.H.G.S.X.
0.7892.60.971621232_atBQ793032hypothetical protein LOC100249843-1e-7At1g05510-O.I.H.G.S.X.
0.7792.30.961615698_atBQ792803--3e+0At1g17350auxin-induced-related / indole-3-acetic acid induced-relatedO.I.H.G.S.X.
0.7390.80.971615612_atCB919542similar to cytosolic class II small heat-shock protein HSP17.5-2e-2At3g03490PEX19-1 (peroxin 19-1)O.I.H.G.S.X.
0.7088.60.961616498_atCD717258hypothetical protein LOC100263757-1e-13At4g16160mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinO.I.H.G.S.X.
0.6585.00.971613370_atCB346796hypothetical protein LOC100246418-5e-4At1g29680unknown proteinO.I.H.G.S.X.
0.6183.20.971609355_atBM436721hypothetical protein LOC100255606-2e-6At2g21490LEA (DEHYDRIN LEA)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.189.1GSM299461C_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.088.2GSM299455C_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
1.987.2GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
1.784.7GSM299458D_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
1.784.7GSM436427V. riparia (VR, PI588259) SD, 13h 42 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.784.7GSM299452B_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
1.784.7GSM147728Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation57Link to GEO
1.784.7GSM436429V. riparia (VR, PI588259) SD, 13h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.683.3GSM322363genotype: Chardonnay - disease type: Bois Noir infected - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
1.683.3GSM287869Green hard berry C3 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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