Co-expression analysis

Gene ID	1616522_at
Gene name	hypothetical protein LOC100262892
Homology with Arabidopsis	Similar to At3g14310: ATPME3 (HF=2e-8)
Module size	15 genes
NF	0.41
%ile	61.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	79.4	0.95	1616522_at	CF403905	hypothetical protein LOC100262892	-	2e-8	At3g14310	ATPME3	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.96	1619847_at	CF514271	hypothetical protein LOC100261336	-	1e+0	At3g22780	TSO1 (CHINESE FOR 'UGLY')	O.I.	H.G.	S.X.	Please select
0.54	75.7	0.96	1607495_at	CF607413	hypothetical protein LOC100264093	-	3e-17	At4g34160	CYCD3	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1608574_at	CF414345	hypothetical protein LOC100249220	-	6e-2	At3g63095	-	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.96	1621574_at	CF511059	hypothetical protein LOC100241803	-	3e-2	At5g28290	ATNEK3 (NIMA-RELATED KINASE3)	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.97	1622084_at	CF513595	hypothetical protein LOC100256435	-	1e+0	At5g51451	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.95	1620766_at	CF609305	hypothetical protein LOC100249220	-	9e-18	At1g23000	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1608474_at	CF403530	hypothetical protein LOC100261256	-	1e-3	At1g09840	ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.97	1616611_at	CF404283	-	-	2e-1	At2g33220	-	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.97	1615295_at	CF373832	hypothetical protein LOC100259092	-	4e-1	At4g08190	Ras-related GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.95	1611168_at	CF208285	hypothetical protein LOC100247366	-	2e-139	At1g50010	TUA2	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.96	1611396_at	BQ800511	hypothetical protein LOC100253893	-	3e-1	At1g05136	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.98	1611516_at	CB008162	hypothetical protein LOC100262734	-	2e-5	At3g28690	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.95	1618871_at	CF510551	hypothetical protein LOC100265907	-	3e-7	At4g38660	thaumatin, putative	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.96	1619599_at	BQ794450	hypothetical protein LOC100243558	-	4e+0	At5g01610	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	93.0	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
2.0	88.2	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53
1.9	87.2	GSM147737	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	66
1.9	87.2	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.9	87.2	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.8	86.0	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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