Co-expression analysis

Gene ID	1616463_at
Gene name	hypothetical protein LOC100249922
Homology with Arabidopsis	Similar to At3g20060: UBC19 (ubiquitin-conjugating enzyme19) (HF=4e-47)
Module size	6 genes
NF	0.69
%ile	93.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.97	1616463_at	CF208407	hypothetical protein LOC100249922	-	4e-47	At3g20060	UBC19 (ubiquitin-conjugating enzyme19)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.96	1619789_at	CF608880	hypothetical protein LOC100244542	-	4e+0	At2g26040	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.97	1620623_at	CF215757	hypothetical protein LOC100249108	-	4e-1	At5g25090	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.97	1620834_at	CB970590	hypothetical protein LOC100253371	-	4e-1	At5g02520	-	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.97	1617668_at	CF514659	hypothetical protein LOC100243346	-	5e-4	At4g11080	high mobility group (HMG1/2) family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1619323_at	CF413821	hypothetical protein LOC100264304	-	7e+0	At5g37780	CAM1 (CALMODULIN 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.3	99.4	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.5	97.5	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.4	97.3	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.9	96.6	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.6	96.0	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.6	96.0	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

A co-expression module including the maize gene, Zm.14028.3.A1_at, orthologous to the query gene, 1616463_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	75.1	Zm.14028.3.A1_at	At3g20060	hypothetical protein LOC100192735	-	8e-6	At1g50490	UBC20 (ubiquitin-conjugating enzyme 20)	O.I.	H.G.	S.X.	Please select
0.82	94.6	Zm.2530.1.A1_at	At3g20060	-	-	7e-5	At1g58350	ZW18	O.I.	H.G.	S.X.	Please select
0.80	94.0	Zm.4048.1.S1_at	At3g20060	ras-related protein ARA-4	-	5e-35	At2g43130	ARA4	O.I.	H.G.	S.X.	Please select
0.74	90.3	Zm.2529.1.A1_s_at	At3g20060	-	-	1e+0	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please select
0.67	85.8	Zm.12396.1.S1_at	At3g20060	hypothetical protein LOC100278085	-	5e+0	At5g03030	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	Zm.14470.1.S1_at	At3g20060	-	-	8e-28	At3g62560	GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.63	81.1	Zm.5352.1.A1_at	At3g20060	zinc finger, C3HC4 type family protein /// 3-isopropylmalate dehydrogenase 2	-	3e-53	At5g14200	3-isopropylmalate dehydrogenase, chloroplast, putative	O.I.	H.G.	S.X.	Please select
0.60	77.8	Zm.2157.6.S1_x_at	At3g20060	hypothetical protein LOC100193584 /// hypothetical protein LOC100194217 /// glycine-rich RNA-binding protein 2	-	7e-7	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.57	75.1	Zm.253.1.A1_at	At3g20060	hypothetical protein LOC100279053	-	5e+0	At5g29807	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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