CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1616463_at

Gene name hypothetical protein LOC100249922
Homology with Arabidopsis Similar to At3g20060: UBC19 (ubiquitin-conjugating enzyme19) (HF=4e-47)

Module size 6 genes

NF 0.69

%ile 93.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.97 1616463_at CF208407 hypothetical protein LOC100249922 - 4e-47 At3g20060 UBC19 (ubiquitin-conjugating enzyme19) O.I. H.G. S.X.
0.67 87.9 0.96 1619789_at CF608880 hypothetical protein LOC100244542 - 4e+0 At2g26040 Bet v I allergen family protein O.I. H.G. S.X.
0.61 83.2 0.97 1620623_at CF215757 hypothetical protein LOC100249108 - 4e-1 At5g25090 plastocyanin-like domain-containing protein O.I. H.G. S.X.
0.55 77.3 0.97 1620834_at CB970590 hypothetical protein LOC100253371 - 4e-1 At5g02520 - O.I. H.G. S.X.
0.55 77.3 0.97 1617668_at CF514659 hypothetical protein LOC100243346 - 5e-4 At4g11080 high mobility group (HMG1/2) family protein O.I. H.G. S.X.
0.50 72.7 0.97 1619323_at CF413821 hypothetical protein LOC100264304 - 7e+0 At5g37780 CAM1 (CALMODULIN 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.3 99.4 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.5 97.5 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.4 97.3 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.9 96.6 GSM287898 Red soft berry B14 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.6 96.0 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.6 96.0 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.6 96.0 GSM287903 Red soft berry A7 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.1 94.6 GSM287900 Red soft berry C15 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.8 93.4 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.6 92.5 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

A co-expression module including the barley gene, Contig9411_at, orthologous to the query gene, 1616463_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 80.3 Contig9411_at At3g20060 - - 8e-12 At3g20060 UBC19 (ubiquitin-conjugating enzyme19) O.I. H.G. S.X.
0.73 88.7 Contig21194_at At3g20060 - - 5e+0 At2g20940 unknown protein O.I. H.G. S.X.
0.60 77.3 Contig21235_at At3g20060 - - 5e-1 At1g74060 60S ribosomal protein L6 (RPL6B) O.I. H.G. S.X.
0.60 77.3 Contig21185_at At3g20060 - - 4e-1 At3g24710 - O.I. H.G. S.X.
0.48 63.2 HV14M13u_at At3g20060 - - 1e+1 At5g26080 proline-rich family protein O.I. H.G. S.X.
0.39 50.5 Contig6578_at At3g20060 - - 1e-27 At1g64650 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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