Co-expression analysis

Gene ID	1616463_at
Gene name	hypothetical protein LOC100249922
Homology with Arabidopsis	Similar to At3g20060: UBC19 (ubiquitin-conjugating enzyme19) (HF=4e-47)
Module size	6 genes
NF	0.69
%ile	93.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.97	1616463_at	CF208407	hypothetical protein LOC100249922	-	4e-47	At3g20060	UBC19 (ubiquitin-conjugating enzyme19)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.96	1619789_at	CF608880	hypothetical protein LOC100244542	-	4e+0	At2g26040	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.97	1620623_at	CF215757	hypothetical protein LOC100249108	-	4e-1	At5g25090	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.97	1620834_at	CB970590	hypothetical protein LOC100253371	-	4e-1	At5g02520	-	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.97	1617668_at	CF514659	hypothetical protein LOC100243346	-	5e-4	At4g11080	high mobility group (HMG1/2) family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1619323_at	CF413821	hypothetical protein LOC100264304	-	7e+0	At5g37780	CAM1 (CALMODULIN 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.3	99.4	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.5	97.5	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.4	97.3	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.9	96.6	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.6	96.0	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.6	96.0	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.6	96.0	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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