Co-expression analysis

Gene ID	1616420_at
Gene name	hypothetical protein LOC100244821
Homology with Arabidopsis	Similar to At1g07920: elongation factor 1-alpha / EF-1-alpha (HF=0)
Module size	9 genes
NF	0.68
%ile	93.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	79.4	0.99	1616420_at	CF515326	hypothetical protein LOC100244821	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.88	95.4	0.99	1613860_s_at	CF512506	cyc07	-	6e-38	At3g04840	40S ribosomal protein S3A (RPS3aA)	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.99	1608096_at	CB978907	hypothetical protein LOC100264515	-	6e-59	At5g39850	40S ribosomal protein S9 (RPS9C)	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.99	1610560_at	BQ797613	hypothetical protein LOC100258347	-	7e-52	At3g47370	40S ribosomal protein S20 (RPS20B)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1610092_at	BQ794603	hypothetical protein LOC100250286	-	2e-18	At5g18380	40S ribosomal protein S16 (RPS16C)	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.99	1610095_s_at	CF516594	hypothetical protein LOC100257471	-	9e-49	At5g23900	60S ribosomal protein L13 (RPL13D)	O.I.	H.G.	S.X.	Please select
0.58	79.8	0.99	1620069_s_at	CB969496	hypothetical protein LOC100248991	-	9e-51	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.99	1621022_at	BQ794425	hypothetical protein LOC100255295	-	7e-43	At3g02080	40S ribosomal protein S19 (RPS19A)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.99	1610193_at	CF214569	hypothetical protein LOC100242819	-	1e-53	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	95.5	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.2	94.9	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.5	91.9	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.2	89.9	GSM147713	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	42
2.2	89.9	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
1.7	84.7	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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