Co-expression analysis

Gene ID	1616419_at
Gene name	hypothetical protein LOC100244325
Homology with Arabidopsis	Similar to At1g11440: - (HF=1e-1)
Module size	7 genes
NF	0.24
%ile	33.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.0	0.96	1616419_at	CD798271	hypothetical protein LOC100244325	-	1e-1	At1g11440	-	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1611216_at	CB912018	hypothetical protein LOC100262087	-	4e-126	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.98	1613287_at	BQ795475	-	-	1e-2	At1g76450	oxygen-evolving complex-related	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.98	1613235_at	CF512455	hypothetical protein LOC100260767	-	1e-20	At1g17080	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.98	1608103_at	CD801640	hypothetical protein LOC100266523	-	3e-61	At2g47060	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.98	1613194_at	CF213913	hypothetical protein LOC100258632	-	4e-23	At5g42000	ORMDL family protein	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.98	1615957_at	BQ798110	hypothetical protein LOC100246271	-	9e-39	At5g20570	RBX1 (RING-BOX 1)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.7	98.5	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.6	92.5	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436357	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.1	89.1	GSM147715	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	44

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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