CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1616416_at

Gene name hypothetical protein LOC100251243
Homology with Arabidopsis Similar to At3g43740: leucine-rich repeat family protein (HF=7e+0)

Module size 6 genes

NF 0.23

%ile 32.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 90.8 0.96 1616416_at CB349840 hypothetical protein LOC100251243 - 7e+0 At3g43740 leucine-rich repeat family protein O.I. H.G. S.X.
0.44 64.1 0.96 1621260_at BQ797265 - - 3e-1 At4g30630 unknown protein O.I. H.G. S.X.
0.22 25.6 0.96 1612983_at CB344129 hypothetical protein LOC100249094 - 1e-1 At3g15790 MBD11 O.I. H.G. S.X.
0.17 18.2 0.96 1616682_at CF512457 hypothetical protein LOC100266059 - 9e-37 At4g18030 dehydration-responsive family protein O.I. H.G. S.X.
0.17 18.2 0.96 1616802_s_at CF200896.1 - - 2e+0 At2g43060 transcription factor O.I. H.G. S.X.
0.14 14.4 0.96 1620387_at CD719602 hypothetical protein LOC100260954 - 2e-30 At5g07290 AML4 (ARABIDOPSIS MEI2-LIKE 4) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.7 96.2 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM147725 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 54
2.7 93.0 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436376 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.4 91.3 GSM436396 V. riparia (VR, PI588259) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the maize gene, Zm.10817.5.A1_x_at, orthologous to the query gene, 1616416_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.0 Zm.10817.5.A1_x_at At3g43740 zein protein 3 /// hypothetical protein LOC100038317 /// z1C alpha zein protein /// z1C alpha zein protein /// hypothetical protein LOC100275744 /// hypothetical protein LOC100279022 - 2e+1 At5g49448 CPuORF4 (Conserved peptide upstream open reading frame 4) O.I. H.G. S.X.
0.30 29.8 Zm.1260.1.A1_at At3g43740 bromodomain containing protein - 9e-2 At5g33390 glycine-rich protein O.I. H.G. S.X.
0.12 5.9 Zm.17639.1.S1_at At3g43740 - - 5e+0 At3g04830 binding O.I. H.G. S.X.
0.11 5.3 Zm.10760.1.S1_at At3g43740 hypothetical protein LOC100277122 - 9e-12 At1g33230 - O.I. H.G. S.X.
0.07 2.9 Zm.9945.1.A1_at At3g43740 hypothetical protein LOC100278191 - 1e+0 At1g58150 unknown protein O.I. H.G. S.X.
0.04 1.5 Zm.15104.1.A1_at At3g43740 - - 2e-1 At3g05080 unknown protein O.I. H.G. S.X.
0.03 1.1 Zm.5479.1.A1_at At3g43740 - - 3e-1 At1g71230 CSN5B (COP9-SIGNALOSOME 5B) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum

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