Co-expression analysis

Gene ID	1616416_at
Gene name	hypothetical protein LOC100251243
Homology with Arabidopsis	Similar to At3g43740: leucine-rich repeat family protein (HF=7e+0)
Module size	6 genes
NF	0.23
%ile	32.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	90.8	0.96	1616416_at	CB349840	hypothetical protein LOC100251243	-	7e+0	At3g43740	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.96	1621260_at	BQ797265	-	-	3e-1	At4g30630	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.96	1612983_at	CB344129	hypothetical protein LOC100249094	-	1e-1	At3g15790	MBD11	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.96	1616682_at	CF512457	hypothetical protein LOC100266059	-	9e-37	At4g18030	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.96	1616802_s_at	CF200896.1	-	-	2e+0	At2g43060	transcription factor	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.96	1620387_at	CD719602	hypothetical protein LOC100260954	-	2e-30	At5g07290	AML4 (ARABIDOPSIS MEI2-LIKE 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	96.2	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
2.7	93.0	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the wheat gene, Ta.11413.1.A1_at, orthologous to the query gene, 1616416_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	83.1	Ta.11413.1.A1_at	At3g43740	-	-	3e+0	At1g02130	ARA-5 (ARABIDOPSIS RAS 5)	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.566.1.A1_at	At3g43740	-	-	2e+0	At3g56260	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	TaAffx.12262.1.A1_at	At3g43740	-	-	1e-2	Atmg00900	-	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.6841.1.A1_at	At3g43740	-	-	3e+0	At3g13227	serine-rich protein-related	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.3438.1.A1_at	At3g43740	-	-	3e-9	At1g49040	SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.26914.1.S1_x_at	At3g43740	-	-	4e+0	At3g06145	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.12290.1.A1_at	At3g43740	-	-	5e+0	At1g26140	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.14827.1.A1_at	At3g43740	-	-	4e+0	At1g29418	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.7702.1.S1_at	At3g43740	-	-	2e-19	At5g55990	CBL2 (CALCINEURIN B-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.26914.2.S1_x_at	At3g43740	-	-	5e+0	At1g09026	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.5556.1.S1_at	At3g43740	-	-	5e-17	At4g38790	ER lumen protein retaining receptor family protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.4060.1.S1_at	At3g43740	-	-	5e-3	At1g17460	TRFL3 (TRF-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.22	27.1	TaAffx.7979.1.S1_at	At3g43740	-	-	3e-2	At1g80860	PLMT (PHOSPHOLIPID N-METHYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.19184.1.S1_at	At3g43740	-	-	4e+0	At4g13263	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.21216.1.S1_at	At3g43740	-	-	2e-29	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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