Co-expression analysis

Gene ID	1616416_at
Gene name	hypothetical protein LOC100251243
Homology with Arabidopsis	Similar to At3g43740: leucine-rich repeat family protein (HF=7e+0)
Module size	6 genes
NF	0.23
%ile	32.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	90.8	0.96	1616416_at	CB349840	hypothetical protein LOC100251243	-	7e+0	At3g43740	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.96	1621260_at	BQ797265	-	-	3e-1	At4g30630	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.96	1612983_at	CB344129	hypothetical protein LOC100249094	-	1e-1	At3g15790	MBD11	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.96	1616682_at	CF512457	hypothetical protein LOC100266059	-	9e-37	At4g18030	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.96	1616802_s_at	CF200896.1	-	-	2e+0	At2g43060	transcription factor	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.96	1620387_at	CD719602	hypothetical protein LOC100260954	-	2e-30	At5g07290	AML4 (ARABIDOPSIS MEI2-LIKE 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	96.2	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
2.7	93.0	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the soybean gene, Gma.14303.1.S1_at, orthologous to the query gene, 1616416_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	Gma.14303.1.S1_at	At3g43740	-	-	2e+0	At5g09990	PROPEP5 (Elicitor peptide 5 precursor)	O.I.	H.G.	S.X.	Please select
0.21	26.6	HgAffx.17296.1.S1_at	At3g43740	-	-	6e+0	At5g02160	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	19.7	PsAffx.C78000009_at	At3g43740	-	-	2e-1	At4g25180	DNA binding / DNA-directed RNA polymerase	O.I.	H.G.	S.X.	Please select
0.04	7.0	GmaAffx.1910.1.S1_at	At3g43740	-	-	2e-1	At5g25980	TGG2 (GLUCOSIDE GLUCOHYDROLASE 2)	O.I.	H.G.	S.X.	Please select
0.00	1.4	GmaAffx.90612.1.S1_at	At3g43740	-	-	2e-14	At5g63470	NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)	O.I.	H.G.	S.X.	Please select
0.00	1.4	GmaAffx.99.2.A1_s_at	At3g43740	Translationally controlled tumor-like protein	-	3e-1	At3g26670	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage