CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1616416_at

Gene name hypothetical protein LOC100251243
Homology with Arabidopsis Similar to At3g43740: leucine-rich repeat family protein (HF=7e+0)

Module size 6 genes

NF 0.23

%ile 32.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 90.8 0.96 1616416_at CB349840 hypothetical protein LOC100251243 - 7e+0 At3g43740 leucine-rich repeat family protein O.I. H.G. S.X.
0.44 64.1 0.96 1621260_at BQ797265 - - 3e-1 At4g30630 unknown protein O.I. H.G. S.X.
0.22 25.6 0.96 1612983_at CB344129 hypothetical protein LOC100249094 - 1e-1 At3g15790 MBD11 O.I. H.G. S.X.
0.17 18.2 0.96 1616682_at CF512457 hypothetical protein LOC100266059 - 9e-37 At4g18030 dehydration-responsive family protein O.I. H.G. S.X.
0.17 18.2 0.96 1616802_s_at CF200896.1 - - 2e+0 At2g43060 transcription factor O.I. H.G. S.X.
0.14 14.4 0.96 1620387_at CD719602 hypothetical protein LOC100260954 - 2e-30 At5g07290 AML4 (ARABIDOPSIS MEI2-LIKE 4) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.7 96.2 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.4 95.5 GSM436351 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.0 94.2 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM147725 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 54
2.7 93.0 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436376 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.4 91.3 GSM436396 V. riparia (VR, PI588259) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g43740, orthologous to the query gene, 1616416_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At3g43740 823485 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMOBFA O.I. H.G. S.X.
0.31 33.8 At1g59900 842284 AT-E1 ALPHA encodes the e1 alpha subunit of the pyruvate dehydrogenase complex (PDC) O.I. H.G. S.X.
0.10 3.4 At1g14685 838031 BPC2 (BASIC PENTACYSTEINE 2) Arabidopsis GBP Basic Penta Cysteine 1 O.I. H.G. S.X.
0.09 2.8 At3g06110 819784 MKP2 (MAPK PHOSPHATASE 2) Encodes a nuclear-localized MAP kinase phosphatase. Plants with reduced levels of MKP2 transcripts are hypersensitive to ozone and ozone-mediated activation of MPK3 and MPK6 is prolonged in these plants. O.I. H.G. S.X.
0.09 2.8 At5g43280 834346 ATDCI1 (DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1) Encodes the peroxisomal delta 3,5-delta2,4-dienoyl-CoA isomerase, a enzyme involved in degradation of unsaturated fatty acids. Gene expression is induced upon seed germination. O.I. H.G. S.X.
0.09 2.8 At1g31440 840034 SH3 domain-containing protein 1 (SH3P1) F:clathrin binding;P:unknown;C:endomembrane system, plasma membrane;MOBPFVA O.I. H.G. S.X.
0.08 2.3 At3g28140 822438 calmodulin-binding protein F:calmodulin binding;P:RNA metabolic process;C:intracellular;BPO O.I. H.G. S.X.
0.07 1.9 At1g06200 837129 serine-type peptidase F:serine-type peptidase activity;P:proteolysis;C:membrane;PMFOB O.I. H.G. S.X.
0.06 1.4 At1g31600 840048 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOPBFV O.I. H.G. S.X.
0.05 1.1 At3g46010 823744 ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) Actin-depolymerizing factor (ADF) and cofilin define a family of actin-binding proteins essential for the rapid turnover of filamentous actin in vivo. O.I. H.G. S.X.
0.04 0.9 At5g50520 835120 nodulin family protein F:unknown;P:unknown;C:endomembrane system;BOPFMA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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