Co-expression analysis

Gene ID	1616366_at
Gene name	hypothetical protein LOC100251921
Homology with Arabidopsis	Similar to At3g53500: zinc knuckle (CCHC-type) family protein (HF=3e-21)
Module size	7 genes
NF	0.42
%ile	63.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.3	0.98	1616366_at	CF215144	hypothetical protein LOC100251921	-	3e-21	At3g53500	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.98	1620260_s_at	CB005426	hypothetical protein LOC100254957	-	4e-56	At5g20000	26S proteasome AAA-ATPase subunit, putative	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.98	1613281_at	CF513460	hypothetical protein LOC100249314	-	4e-33	At3g22440	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1606720_at	CD800244	hypothetical protein LOC100253703	-	8e-111	At1g20090	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2)	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.98	1618553_at	CF209161	similar to protein kinase family protein	-	1e-2	At2g32850	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1607823_s_at	CF405744	hypothetical protein LOC100263158	-	1e+0	At5g59000	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.98	1617050_at	CF515290	hypothetical protein LOC100249740	-	2e-2	At1g11400	PYM (Partner of Y14-Mago)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	95.5	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
3.0	94.2	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
2.7	93.0	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.7	93.0	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
2.6	92.5	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
2.5	91.9	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
2.5	91.9	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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