Co-expression analysis

Gene ID 1616357_at
Gene name hypothetical protein LOC100255530
Homology with ArabidopsisSimilar to At2g17220: protein kinase, putative (HF=5e-16)
Module size 7 genes
NF 0.27
%ile 38.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.3954.90.901616357_atCF516994hypothetical protein LOC100255530-5e-16At2g17220protein kinase, putativeO.I.H.G.S.X.
0.7390.80.911620018_atCF203824.1--2e+0At5g44568unknown proteinO.I.H.G.S.X.
0.3345.70.911615694_atBQ799849hypothetical protein LOC100257251-1e+0At5g39670calcium-binding EF hand family proteinO.I.H.G.S.X.
0.3243.10.921622593_atCF404412hypothetical protein LOC100242684-2e+0At3g11820SYP121 (SYNTAXIN OF PLANTS 121)O.I.H.G.S.X.
0.2022.40.901617093_atCF519144hypothetical protein LOC100241671-4e+0At1g70700TIFY7O.I.H.G.S.X.
0.1616.70.911613840_atBQ800291ABC transporter-like-6e-7At1g15520PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)O.I.H.G.S.X.
0.1313.30.921618804_atCF605303--5e+0At5g14370-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.696.0GSM436349Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.094.2GSM322366genotype: Chardonnay - disease type: Healthy - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.692.5GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436369Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436368Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM147685Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation14Link to GEO
2.189.1GSM147741Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation70Link to GEO
2.189.1GSM322365genotype: Chardonnay - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.088.2GSM147675Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation4Link to GEO
2.088.2GSM436371Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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