CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1616292_at

Gene name
Homology with Arabidopsis Similar to At5g19740: peptidase M28 family protein (HF=2e+0)

Module size 6 genes

NF 0.44

%ile 65.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 77.3 0.95 1616292_at CF209464 - - 2e+0 At5g19740 peptidase M28 family protein O.I. H.G. S.X.
0.46 66.5 0.95 1607695_at CF208550 - - 2e-9 At1g15880 GOS11 (golgi snare 11) O.I. H.G. S.X.
0.44 64.1 0.95 1607491_at CF202496.1 - - 3e+0 At4g10465 metal ion binding O.I. H.G. S.X.
0.36 50.7 0.96 1617825_s_at CF205420.1 - - 3e-23 At1g15880 GOS11 (golgi snare 11) O.I. H.G. S.X.
0.33 45.7 0.96 1607563_at CF203757.1 - - 7e-49 At5g61510 NADP-dependent oxidoreductase, putative O.I. H.G. S.X.
0.31 41.3 0.96 1621710_at CF201680.1 - - 3e-1 At1g59690 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.4 97.3 GSM436428 V. riparia (VR, PI588259) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.4 97.3 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM436349 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM436381 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM287888 Green soft berry C24 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM287885 Green soft berry A22 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM287877 Green hard berry B12 from plant 2 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM436408 V. riparia (VR, PI588259) LD, 15h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.1112.1.A1_s_at, orthologous to the query gene, 1616292_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.47 59.9 ZmAffx.1112.1.A1_s_at At5g19740 - - 7e-13 Atcg00040 - O.I. H.G. S.X.
0.36 41.3 Zm.6578.1.A1_at At5g19740 hypothetical protein LOC100280400 - 2e+0 At4g11510 RALFL28 (ralf-like 28) O.I. H.G. S.X.
0.35 38.9 Zm.6569.9.A1_x_at At5g19740 40S ribosomal protein S15 - 6e-37 At5g09510 40S ribosomal protein S15 (RPS15D) O.I. H.G. S.X.
0.35 38.9 Zm.6581.1.S1_at At5g19740 hypothetical protein LOC100272962 - 1e-5 At2g25070 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.35 38.9 Zm.7457.1.A1_at At5g19740 cold shock protein-1 - 1e+0 At5g40645 nitrate-responsive NOI protein, putative O.I. H.G. S.X.
0.31 31.6 Zm.17573.1.A1_at At5g19740 regulatory subunit - 8e+0 At5g54640 RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5) O.I. H.G. S.X.
0.25 21.3 Zm.7863.1.S1_at At5g19740 hypothetical protein LOC100274181 - 2e-7 At3g56720 unknown protein O.I. H.G. S.X.
0.12 5.9 Zm.5805.2.A1_a_at At5g19740 filamentation temperature-sensitive H 2A /// filamentation temperature-sensitive H 2B - 2e-56 At1g06430 FTSH8 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum

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