Co-expression analysis

Gene ID	1616292_at
Gene name
Homology with Arabidopsis	Similar to At5g19740: peptidase M28 family protein (HF=2e+0)
Module size	6 genes
NF	0.44
%ile	65.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	77.3	0.95	1616292_at	CF209464	-	-	2e+0	At5g19740	peptidase M28 family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.95	1607695_at	CF208550	-	-	2e-9	At1g15880	GOS11 (golgi snare 11)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.95	1607491_at	CF202496.1	-	-	3e+0	At4g10465	metal ion binding	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.96	1617825_s_at	CF205420.1	-	-	3e-23	At1g15880	GOS11 (golgi snare 11)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.96	1607563_at	CF203757.1	-	-	7e-49	At5g61510	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.96	1621710_at	CF201680.1	-	-	3e-1	At1g59690	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	97.3	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287877	Green hard berry B12 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.14777.1.A1_at, orthologous to the query gene, 1616292_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.4	TaAffx.14777.1.A1_at	At5g19740	-	-	1e+0	At3g49580	LSU1 (RESPONSE TO LOW SULFUR 1)	O.I.	H.G.	S.X.	Please select
0.67	86.3	TaAffx.78296.1.S1_at	At5g19740	-	-	8e-1	At5g45700	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.	Please select
0.63	83.1	TaAffx.8084.2.S1_at	At5g19740	-	-	3e-2	At5g02480	-	O.I.	H.G.	S.X.	Please select
0.63	83.1	Ta.6692.2.A1_at	At5g19740	-	-	1e-6	At4g36960	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	Ta.13274.2.A1_at	At5g19740	-	-	7e-2	At5g05360	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	TaAffx.15154.2.S1_s_at	At5g19740	-	-	9e-1	At3g62030	peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)	O.I.	H.G.	S.X.	Please select
0.44	64.5	TaAffx.84709.1.S1_at	At5g19740	-	-	3e+0	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.23406.1.S1_at	At5g19740	-	-	9e-4	At3g53610	ATRAB8	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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