Co-expression analysis

Gene ID	1616288_at
Gene name
Homology with Arabidopsis	Similar to At2g39920: acid phosphatase class B family protein (HF=4e+0)
Module size	11 genes
NF	0.52
%ile	77.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.9	0.92	1616288_at	CF605545	-	-	4e+0	At2g39920	acid phosphatase class B family protein	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.93	1620186_at	CF511359	-	-	7e-1	At5g65390	AGP7	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.94	1609990_at	CB009298	similar to putative ethylene response factor ERF3b	-	1e-13	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.95	1606793_at	CF606029	hypothetical protein LOC100255095	-	1e+0	At1g29850	double-stranded DNA-binding family protein	O.I.	H.G.	S.X.	Please select
0.58	79.8	0.93	1612490_at	CB035871	-	-	4e+0	At2g39920	acid phosphatase class B family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.95	1608966_at	CB982651	hypothetical protein LOC100256404	-	2e-4	At5g59550	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.94	1616198_at	CF405950	hypothetical protein LOC100242144	-	1e-7	At1g28370	ERF11 (ERF DOMAIN PROTEIN 11)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.95	1608256_at	CF404926	hypothetical protein LOC100265659	-	3e-2	At5g23680	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.96	1615010_at	CF406012	hypothetical protein LOC100260856	-	8e-3	At4g15120	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.94	1611285_s_at	CA809190	similar to DNA-binding protein	-	3e-22	At4g31550	WRKY11	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.95	1615403_at	CD798952	hypothetical protein LOC100255828	-	2e-1	At1g35537	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	93.0	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.6	92.5	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
2.6	92.5	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.1	89.1	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM287871	Green hard berry C4 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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