CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1616278_a_at

Gene name hypothetical protein LOC100257613
Homology with Arabidopsis Similar to At3g12510: unknown protein (HF=5e+0)

Module size 7 genes

NF 0.41

%ile 60.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 84.3 0.92 1616278_a_at CB036183 hypothetical protein LOC100257613 - 5e+0 At3g12510 unknown protein O.I. H.G. S.X.
0.67 87.9 0.94 1609116_at CF372509 hypothetical protein LOC100257613 - 3e+0 At1g54460 - O.I. H.G. S.X.
0.50 72.7 0.96 1619349_at CF608419 hypothetical protein LOC100259523 - 1e+0 At4g37720 ATPSK6 (PHYTOSULFOKINE 6 PRECURSOR) O.I. H.G. S.X.
0.33 45.7 0.94 1611506_x_at CK136902.1 hypothetical protein LOC100258503 - 4e-3 At2g02060 transcription factor O.I. H.G. S.X.
0.33 45.7 0.95 1606573_s_at BQ794579 hypothetical protein LOC100249473 - 3e-6 At1g51200 zinc finger (AN1-like) family protein O.I. H.G. S.X.
0.25 30.5 0.95 1607028_at CK136898.1 hypothetical protein LOC100254073 - 5e+0 At5g48710 ubiquitin-related O.I. H.G. S.X.
0.22 25.6 0.94 1609519_at CF603152 hypothetical protein LOC100259523 - 7e-5 At3g01820 adenylate kinase family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.1 99.7 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
3.2 94.9 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
2.9 93.8 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
2.8 93.4 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
2.7 93.0 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
2.4 91.3 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436423 V. riparia (VR, PI588259) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436378 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436362 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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