Co-expression analysis

Gene ID	1616264_at
Gene name	hypothetical protein LOC100253432
Homology with Arabidopsis	Similar to At3g57880: C2 domain-containing protein (HF=9e-2)
Module size	9 genes
NF	0.28
%ile	40.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	90.8	0.97	1616264_at	CB006693	hypothetical protein LOC100253432	-	9e-2	At3g57880	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.97	1622111_at	CB970952	hypothetical protein LOC100242512	-	1e-3	At3g04470	-	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.97	1611698_at	CA812037	hypothetical protein LOC100263780	-	2e+0	At5g65360	histone H3	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1618930_at	CF206622.1	hypothetical protein LOC100254102	-	2e+0	At4g24660	ATHB22 (HOMEOBOX PROTEIN 22)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1610556_at	CF415554	hypothetical protein LOC100250209	-	4e+0	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.97	1617131_at	CF511594	hypothetical protein LOC100242326	-	2e+0	At1g54095	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.98	1611343_at	CB974830	hypothetical protein LOC100261168	-	6e+0	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.98	1610189_at	CF211002	hypothetical protein LOC100257691	-	4e+0	At5g47830	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.98	1619013_at	CF514808	hypothetical protein LOC100242671	-	3e-32	At1g03260	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.2	89.9	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.2	89.9	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM436423	V. riparia (VR, PI588259) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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