Co-expression analysis

Gene ID 1616230_x_at
Gene name
Homology with ArabidopsisSimilar to At5g43510: - (HF=2e+1)
Module size 6 genes
NF 0.73
%ile 95.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.981616230_x_atCF202354.1--2e+1At5g43510-O.I.H.G.S.X.
0.8394.60.961614054_atCF206745.1--4e-47At2g27960CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)O.I.H.G.S.X.
0.8093.60.971615753_atCF207576--2e-11At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.7390.80.971618907_x_atCF202612.1--4e+0At5g17470calmodulin-related protein, putativeO.I.H.G.S.X.
0.6183.20.961609904_atCF204988.1hypothetical protein LOC100267206-4e-78At5g61410RPEO.I.H.G.S.X.
0.4464.10.961609380_x_atCF203033.1--8e-10At5g38410ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7390.80.941609150_x_atCF206331.1--1e+1At5g19240unknown proteinO.I.H.G.S.X.
0.7390.80.961621406_atCF205304.1--1e-13At4g36190serine-type peptidaseO.I.H.G.S.X.
0.7189.50.951612401_x_atCF201367.1--6e-1At1g07060unknown proteinO.I.H.G.S.X.
0.6787.90.941617102_atCF202285.1--2e-12At5g38410ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)O.I.H.G.S.X.
0.6384.30.951606633_atCD801002--2e+0At2g42190unknown proteinO.I.H.G.S.X.
0.6384.30.941621717_atCF518880--4e+0At5g03495nucleotide bindingO.I.H.G.S.X.
0.6183.20.961608322_x_atCF205688.1--7e-1At5g10890myosin heavy chain-relatedO.I.H.G.S.X.
0.6081.90.951611255_s_atCF205309.1S-adenosyl-L-methionine decarboxylase-4e+0At2g25080ATGPX1 (GLUTATHIONE PEROXIDASE 1)O.I.H.G.S.X.
0.5779.80.961609907_x_atCF201896.1--8e+0At5g50345-O.I.H.G.S.X.
0.5577.30.951622826_x_atCF202930.1--9e+0At2g04845GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.5072.70.961616126_atCF203840.1--8e-11At2g38140PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4)O.I.H.G.S.X.
0.5072.70.981620380_x_atCF203025.1--1e-1At5g38410ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)O.I.H.G.S.X.
0.4666.50.951613248_atCF202371.1--4e-3At3g05590RPL18 (RIBOSOMAL PROTEIN L18)O.I.H.G.S.X.
0.4666.50.931614223_atCF202055.1--3e+0At5g14400CYP724A1O.I.H.G.S.X.
0.4158.70.861611893_x_atCF201821.1--2e-1At5g05210nucleolar matrix protein-relatedO.I.H.G.S.X.
0.4057.70.891618086_atCB970077hypothetical protein LOC100242385-1e+0At5g63220unknown proteinO.I.H.G.S.X.
0.4057.70.951609911_atCF203708.1--1e+0At3g50730protein kinase, putativeO.I.H.G.S.X.
0.3954.90.921610632_atCF208658--2e+0Atmg00690-O.I.H.G.S.X.
0.3650.70.931609854_atCF207485--7e-5At4g37990ELI3-2 (ELICITOR-ACTIVATED GENE 3-2)O.I.H.G.S.X.
0.3650.70.961622041_atCF200919.1hypothetical protein LOC100260169-2e-31At3g55800SBPASE (sedoheptulose-bisphosphatase)O.I.H.G.S.X.
0.3650.70.881607930_atCF201821.1--2e-1At5g05210nucleolar matrix protein-relatedO.I.H.G.S.X.
0.3446.80.891618593_x_atCF202067.1--2e+0At1g30460CPSF30O.I.H.G.S.X.
0.3446.80.931614615_s_atCF203062.1--4e+0At2g04170meprin and TRAF homology domain-containing protein / MATH domain-containing proteinO.I.H.G.S.X.
0.3243.10.941614011_x_atCF205848.1--3e+0At4g12990unknown proteinO.I.H.G.S.X.
0.3243.10.901620668_s_atCF206489.1--2e-1At3g60530zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.3141.30.861610860_atCB972633--2e+0At3g49550unknown proteinO.I.H.G.S.X.
0.3141.30.921621850_atCD715357--5e+0At5g53030unknown proteinO.I.H.G.S.X.
0.3141.30.931612513_atCF203588.1hypothetical protein LOC100250896-7e-49At5g50920CLPC1O.I.H.G.S.X.
0.3039.40.931622661_x_atCF206215.1--4e+0Atmg00550-O.I.H.G.S.X.
0.2837.70.941617507_s_atCF206215.1--4e+0Atmg00550-O.I.H.G.S.X.
0.2734.00.961620264_x_atCF201907.1--2e-1At5g10860CBS domain-containing proteinO.I.H.G.S.X.
0.2734.00.961621187_s_atCF201896.1--8e+0At5g50345-O.I.H.G.S.X.
0.2734.00.941610994_x_atCF203231.1--1e+0At1g48530-O.I.H.G.S.X.
0.2734.00.941610214_atCF201529.1--1e+0At3g27070TOM20-1 (translocase outer membrane 20-1)O.I.H.G.S.X.
0.2632.00.901613898_x_atCF201438.1--4e+0At2g27229unknown proteinO.I.H.G.S.X.
0.2632.00.941615833_s_atCF202514.1similar to putative polyubiquitin (UBQ10)-5e-1At5g03240UBQ3 (POLYUBIQUITIN 3)O.I.H.G.S.X.
0.2530.50.851618335_atBQ799968--4e+0At5g15390tRNA/rRNA methyltransferase (SpoU) family proteinO.I.H.G.S.X.
0.2530.50.901620371_atCD003792--5e+0At5g22530unknown proteinO.I.H.G.S.X.
0.2530.50.921618665_atCD799476--7e-1At5g56070unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.294.9GSM147701Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation30Link to GEO
3.294.9GSM436354Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.294.9GSM436360Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.893.4GSM436355Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.491.3GSM147678Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation7Link to GEO
2.491.3GSM436358Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436379Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436380Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436359Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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