CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1616230_x_at

Gene name
Homology with Arabidopsis Similar to At5g43510: - (HF=2e+1)

Module size 6 genes

NF 0.73

%ile 95.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.98 1616230_x_at CF202354.1 - - 2e+1 At5g43510 - O.I. H.G. S.X.
0.83 94.6 0.96 1614054_at CF206745.1 - - 4e-47 At2g27960 CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1) O.I. H.G. S.X.
0.80 93.6 0.97 1615753_at CF207576 - - 2e-11 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) O.I. H.G. S.X.
0.73 90.8 0.97 1618907_x_at CF202612.1 - - 4e+0 At5g17470 calmodulin-related protein, putative O.I. H.G. S.X.
0.61 83.2 0.96 1609904_at CF204988.1 hypothetical protein LOC100267206 - 4e-78 At5g61410 RPE O.I. H.G. S.X.
0.44 64.1 0.96 1609380_x_at CF203033.1 - - 8e-10 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.2 94.9 GSM147701 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation 30
3.2 94.9 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.2 94.9 GSM436360 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.8 93.4 GSM436355 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.6 92.5 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.4 91.3 GSM147678 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 7
2.4 91.3 GSM436358 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436379 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436380 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436359 Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the maize gene, Zm.5483.1.A1_at, orthologous to the query gene, 1616230_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.6 Zm.5483.1.A1_at At5g43510 - - 3e+0 At2g20605 - O.I. H.G. S.X.
0.56 74.4 Zm.16275.1.A1_at At5g43510 - - 1e+0 At1g65980 TPX1 (thioredoxin-dependent peroxidase 1) O.I. H.G. S.X.
0.56 74.4 Zm.10094.1.A1_at At5g43510 hypothetical protein LOC100278317 - 4e+0 At4g08455 BTB/POZ domain-containing protein O.I. H.G. S.X.
0.56 74.4 Zm.1472.1.S1_at At5g43510 hypothetical protein LOC100275934 - 4e-1 At2g26510 PDE135 (pigment defective embryo 135) O.I. H.G. S.X.
0.55 71.6 Zm.4529.2.S1_at At5g43510 - - 8e+0 Atmg00050 - O.I. H.G. S.X.
0.54 69.8 Zm.16989.1.S1_at At5g43510 - - 8e-2 At4g28480 DNAJ heat shock family protein O.I. H.G. S.X.
0.50 65.7 Zm.5328.2.A1_a_at At5g43510 hypothetical protein LOC100280151 - 2e+0 At4g04957 - O.I. H.G. S.X.
0.46 58.4 Zm.1032.1.A1_at At5g43510 polyneuridine-aldehyde esterase - 3e-5 At1g33990 MES14 (METHYL ESTERASE 14) O.I. H.G. S.X.
0.46 58.4 Zm.7409.1.A1_at At5g43510 hypothetical protein LOC100191559 - 2e-1 At4g15790 unknown protein O.I. H.G. S.X.
0.46 58.4 Zm.14710.2.A1_at At5g43510 - - 2e-1 At4g03565 - O.I. H.G. S.X.
0.45 56.4 Zm.3855.1.S1_at At5g43510 - - 2e+0 At4g38680 GRP2 (GLYCINE RICH PROTEIN 2) O.I. H.G. S.X.
0.44 55.7 Zm.9377.1.A1_at At5g43510 hypothetical protein LOC100275736 - 4e-1 At3g10610 40S ribosomal protein S17 (RPS17C) O.I. H.G. S.X.
0.44 55.7 Zm.322.1.S1_at At5g43510 basal layer antifungal peptide - 5e+0 At5g06230 unknown protein O.I. H.G. S.X.
0.42 51.3 Zm.13365.1.A1_at At5g43510 - - 2e+0 At1g48440 unknown protein O.I. H.G. S.X.
0.41 49.7 Zm.17564.1.S1_at At5g43510 AGG2 - 2e+0 At1g68585 unknown protein O.I. H.G. S.X.
0.37 42.3 Zm.1840.2.A1_a_at At5g43510 hypothetical protein LOC100216597 - 3e+0 At5g60580 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.34 37.2 Zm.5497.1.A1_at At5g43510 hypothetical protein LOC100279808 - 8e-5 At5g56360 calmodulin-binding protein O.I. H.G. S.X.
0.25 21.3 Zm.15852.2.S1_a_at At5g43510 - - 1e-41 At5g03430 phosphoadenosine phosphosulfate (PAPS) reductase family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum

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