Co-expression analysis

Gene ID 1616230_x_at
Gene name
Homology with ArabidopsisSimilar to At5g43510: - (HF=2e+1)
Module size 6 genes
NF 0.73
%ile 95.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.981616230_x_atCF202354.1--2e+1At5g43510-O.I.H.G.S.X.
0.8394.60.961614054_atCF206745.1--4e-47At2g27960CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)O.I.H.G.S.X.
0.8093.60.971615753_atCF207576--2e-11At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.7390.80.971618907_x_atCF202612.1--4e+0At5g17470calmodulin-related protein, putativeO.I.H.G.S.X.
0.6183.20.961609904_atCF204988.1hypothetical protein LOC100267206-4e-78At5g61410RPEO.I.H.G.S.X.
0.4464.10.961609380_x_atCF203033.1--8e-10At5g38410ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.294.9GSM147701Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation30Link to GEO
3.294.9GSM436354Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.294.9GSM436360Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.893.4GSM436355Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.491.3GSM147678Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation7Link to GEO
2.491.3GSM436358Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436379Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436380Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436359Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.7793.1.A1_at, orthologous to the query gene, 1616230_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9899.9Ta.7793.1.A1_atAt5g43510--5e+0At4g33467unknown proteinO.I.H.G.S.X.
0.4362.2Ta.3188.1.S1_atAt5g43510--7e-2At1g50470-O.I.H.G.S.X.
0.3549.8Ta.10949.1.S1_atAt5g43510--3e-1At5g03590GDSL-motif lipase/hydrolase protein-relatedO.I.H.G.S.X.
0.2939.2Ta.2825.1.S1_a_atAt5g43510--4e-1At1g04778unknown proteinO.I.H.G.S.X.
0.2839.2Ta.2946.1.S1_atAt5g43510--6e-1At1g26740structural constituent of ribosomeO.I.H.G.S.X.
0.2735.6Ta.251.1.S1_atAt5g43510--3e-9At4g22260IM (IMMUTANS)O.I.H.G.S.X.
0.2735.6Ta.1977.1.S1_x_atAt5g43510--1e+1At5g60590yrdC protein-relatedO.I.H.G.S.X.
0.2633.6Ta.16093.1.S1_atAt5g43510--1e+1At5g62610basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.2633.6Ta.23944.1.S1_atAt5g43510--8e+0At3g54040photoassimilate-responsive protein-relatedO.I.H.G.S.X.
0.2532.1Ta.237.1.S1_a_atAt5g43510glutathione-S-transferase-7e+0At5g09995unknown proteinO.I.H.G.S.X.
0.2532.1Ta.12425.1.A1_atAt5g43510--1e+0At1g14680unknown proteinO.I.H.G.S.X.
0.2430.3Ta.13207.1.S1_x_atAt5g43510--5e-3At5g38160protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.2329.0Ta.8481.1.S1_atAt5g43510--1e-4At1g79790haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.2227.1Ta.25086.1.A1_atAt5g43510--9e-1At5g52740heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.2227.1Ta.20639.2.A1_a_atAt5g43510--3e-7At3g47470LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)O.I.H.G.S.X.
0.2227.1Ta.14011.2.A1_atAt5g43510--5e-2At2g01780S-locus glycoprotein, putativeO.I.H.G.S.X.
0.2125.5Ta.7921.1.S1_atAt5g43510--5e+0At5g6117040S ribosomal protein S19 (RPS19C)O.I.H.G.S.X.
0.2125.5Ta.7930.1.S1_atAt5g43510--2e+1At5g25840unknown proteinO.I.H.G.S.X.
0.2125.5Ta.19995.1.S1_atAt5g43510--3e+0At4g39890AtRABH1c (Arabidopsis Rab GTPase homolog H1c)O.I.H.G.S.X.
0.2125.5Ta.12420.1.S1_x_atAt5g43510--2e-2At3g49430SRp34a (Ser/Arg-rich protein 34a)O.I.H.G.S.X.
0.2125.5Ta.12565.2.S1_atAt5g43510chloroplast Ptr ToxA-binding protein-1e-11At2g20890PSB29O.I.H.G.S.X.
0.2024.0Ta.2522.1.S1_atAt5g43510--1e-85At1g10630ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)O.I.H.G.S.X.
0.2024.0Ta.8567.1.S1_atAt5g43510--5e-8At3g47060ftsh7 (FtsH protease 7)O.I.H.G.S.X.
0.2024.0TaAffx.98182.1.S1_atAt5g43510--1e+1At2g02280AtPP2-B4 (Phloem protein 2-B4)O.I.H.G.S.X.
0.1922.4Ta.28363.1.A1_atAt5g43510--1e-1At5g64040PSANO.I.H.G.S.X.
0.1922.4Ta.28404.1.S1_s_atAt5g43510--8e-12At1g13300myb family transcription factorO.I.H.G.S.X.
0.1922.4Ta.10166.1.A1_atAt5g43510--1e-26At1g44446CH1 (CHLORINA 1)O.I.H.G.S.X.
0.1922.4Ta.12050.1.A1_atAt5g43510--1e-3At1g043502-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.1922.4Ta.3916.1.S1_a_atAt5g43510--5e-1At1g10960ATFD1 (FERREDOXIN 1)O.I.H.G.S.X.
0.1821.0Ta.22932.2.S1_x_atAt5g43510--1e+0At4g15710unknown proteinO.I.H.G.S.X.
0.1821.0Ta.4417.1.S1_a_atAt5g43510--4e-1At3g53470unknown proteinO.I.H.G.S.X.
0.1821.0Ta.12407.1.A1_atAt5g43510--3e+0At2g47530-O.I.H.G.S.X.
0.1821.0Ta.2406.3.S1_x_atAt5g43510--5e-3At5g38660APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)O.I.H.G.S.X.
0.1821.0TaAffx.92274.1.A1_atAt5g43510--1e+0At4g39990RABA4B (RAB GTPASE HOMOLOG A4B)O.I.H.G.S.X.
0.1719.8Ta.1971.2.S1_x_atAt5g43510--4e-1At5g08290YLS8O.I.H.G.S.X.
0.1719.8Ta.23319.1.S1_atAt5g43510--2e-7At1g65260PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4)O.I.H.G.S.X.
0.1719.8Ta.3593.1.S1_atAt5g43510--2e-16At5g49940NFU2 (NIFU-LIKE PROTEIN 2)O.I.H.G.S.X.
0.1719.8Ta.9110.1.S1_atAt5g43510--4e-1At2g26710BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1)O.I.H.G.S.X.
0.1719.8Ta.4668.3.S1_a_atAt5g43510--3e+0At3g15900unknown proteinO.I.H.G.S.X.
0.1517.1TaAffx.15726.1.S1_atAt5g43510--7e+0At3g44180syntaxin-related family proteinO.I.H.G.S.X.
0.1415.8Ta.14598.1.S1_atAt5g43510Peroxisomal ascorbate peroxidase-2e-13At4g35000APX3 (ASCORBATE PEROXIDASE 3)O.I.H.G.S.X.
0.1415.8Ta.23792.3.S1_x_atAt5g43510--9e-1At1g80990XH domain-containing proteinO.I.H.G.S.X.
0.1314.6Ta.21068.1.S1_atAt5g43510--3e+0At5g54470zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.1112.4Ta.3238.1.A1_a_atAt5g43510--2e-4At1g80940unknown proteinO.I.H.G.S.X.
0.1112.4Ta.23759.1.S1_atAt5g43510--1e-12At1g64860SIGA (SIGMA FACTOR A)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



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