Co-expression analysis

Gene ID 1616230_x_at
Gene name
Homology with ArabidopsisSimilar to At5g43510: - (HF=2e+1)
Module size 6 genes
NF 0.73
%ile 95.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.981616230_x_atCF202354.1--2e+1At5g43510-O.I.H.G.S.X.
0.8394.60.961614054_atCF206745.1--4e-47At2g27960CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)O.I.H.G.S.X.
0.8093.60.971615753_atCF207576--2e-11At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.7390.80.971618907_x_atCF202612.1--4e+0At5g17470calmodulin-related protein, putativeO.I.H.G.S.X.
0.6183.20.961609904_atCF204988.1hypothetical protein LOC100267206-4e-78At5g61410RPEO.I.H.G.S.X.
0.4464.10.961609380_x_atCF203033.1--8e-10At5g38410ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.294.9GSM147701Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation30Link to GEO
3.294.9GSM436354Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.294.9GSM436360Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.893.4GSM436355Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.491.3GSM147678Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation7Link to GEO
2.491.3GSM436358Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436379Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436380Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436359Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, HV12J02u_s_at, orthologous to the query gene, 1616230_x_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6885.1HV12J02u_s_atAt5g43510--2e-1At2g07678unknown proteinO.I.H.G.S.X.
0.7187.1HO11K23S_s_atAt5g43510--4e+0At3g17420GPK1O.I.H.G.S.X.
0.6784.7Contig14918_atAt5g43510--7e-3At5g64960CDKC2 (Cyclin dependent kinase group C 2)O.I.H.G.S.X.
0.6784.7HV12H12u_atAt5g43510--2e-45At4g05050UBQ11 (UBIQUITIN 11)O.I.H.G.S.X.
0.6784.7HP01O07w_atAt5g43510--3e+0At5g16490RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)O.I.H.G.S.X.
0.6784.7Contig6960_atAt5g43510--1e+0At4g29770-O.I.H.G.S.X.
0.6380.3Contig3565_s_atAt5g43510--2e-1At4g01430nodulin MtN21 family proteinO.I.H.G.S.X.
0.6178.7Contig7635_s_atAt5g43510--3e-1At5g42630ATS (ABERRANT TESTA SHAPE)O.I.H.G.S.X.
0.6077.3HVSMEg0015A14r2_atAt5g43510--1e+0At5g03905hesB-like domain-containing proteinO.I.H.G.S.X.
0.5975.8Contig20065_atAt5g43510--4e-1At4g11600ATGPX6 (GLUTATHIONE PEROXIDASE 6)O.I.H.G.S.X.
0.5674.3Contig16389_atAt5g43510--4e-9At3g20440alpha-amylase/ catalytic/ cation bindingO.I.H.G.S.X.
0.5268.3Contig18430_atAt5g43510--2e-2At1g18340basal transcription factor complex subunit-relatedO.I.H.G.S.X.
0.5167.5HVSMEb0005F19r2_atAt5g43510--3e-1At4g09010APX4 (ASCORBATE PEROXIDASE 4)O.I.H.G.S.X.
0.5167.5Contig13565_atAt5g43510--9e+0At4g29770-O.I.H.G.S.X.
0.4963.7Contig18738_atAt5g43510--4e+0At5g11950protein homodimerizationO.I.H.G.S.X.
0.4762.2HV14N11u_s_atAt5g43510--3e-1At5g64490bindingO.I.H.G.S.X.
0.4458.9Contig9578_s_atAt5g43510--9e-13At5g64030dehydration-responsive protein-relatedO.I.H.G.S.X.
0.4153.9Contig6541_atAt5g43510--5e+0At5g56750Ndr family proteinO.I.H.G.S.X.
0.3747.9HO09D01S_atAt5g43510--2e-1Atmg00990-O.I.H.G.S.X.
0.3647.1Contig982_atAt5g43510--2e-1At5g20520WAV2 (WAVY GROWTH 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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