Co-expression analysis

Gene ID	1616230_x_at
Gene name
Homology with Arabidopsis	Similar to At5g43510: - (HF=2e+1)
Module size	6 genes
NF	0.73
%ile	95.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.98	1616230_x_at	CF202354.1	-	-	2e+1	At5g43510	-	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.96	1614054_at	CF206745.1	-	-	4e-47	At2g27960	CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.97	1615753_at	CF207576	-	-	2e-11	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.97	1618907_x_at	CF202612.1	-	-	4e+0	At5g17470	calmodulin-related protein, putative	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.96	1609904_at	CF204988.1	hypothetical protein LOC100267206	-	4e-78	At5g61410	RPE	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.96	1609380_x_at	CF203033.1	-	-	8e-10	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.9	GSM147701	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	30
3.2	94.9	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM147678	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	7
2.4	91.3	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436379	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436359	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the soybean gene, HgAffx.3477.1.A1_at, orthologous to the query gene, 1616230_x_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	HgAffx.3477.1.A1_at	At5g43510	-	-	3e+0	At5g27710	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	PsAffx.C83000002_at	At5g43510	-	-	9e-1	At3g28980	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	48.6	PsAffx.psZG005xN22f_s_at	At5g43510	-	-	9e+0	At5g14602	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	PsAffx.C11000025_at	At5g43510	-	-	5e-4	At4g32551	LUG (LEUNIG)	O.I.	H.G.	S.X.	Please select
0.03	5.8	HgAffx.16903.1.S1_at	At5g43510	-	-	1e+0	At4g12880	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.03	5.8	PsAffx.C59000014_at	At5g43510	-	-	1e-1	At5g53910	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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