Co-expression analysis

Gene ID	1616189_at
Gene name	hypothetical protein LOC100260741
Homology with Arabidopsis	Similar to At1g75820: CLV1 (CLAVATA 1) (HF=6e-18)
Module size	22 genes
NF	0.25
%ile	36.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	95.1	0.95	1616189_at	CF511570	hypothetical protein LOC100260741	-	6e-18	At1g75820	CLV1 (CLAVATA 1)	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.96	1612831_s_at	CF201533.1	H+-pyrophosphatase	-	5e-9	At1g15690	AVP1	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.97	1622167_at	CB007965	hypothetical protein LOC100249144	-	9e-5	At5g23410	-	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.97	1615292_at	CF214583	similar to oligopeptidase A	-	1e-37	At5g10540	peptidase M3 family protein / thimet oligopeptidase family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.96	1616540_at	CF414501	hypothetical protein LOC100244175	-	3e-14	At1g71865	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.96	1622775_at	CF415430	hypothetical protein LOC100241371	-	3e-7	At4g00570	malate oxidoreductase, putative	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.97	1612742_s_at	CF372931	hypothetical protein LOC100260825	-	4e-3	At1g51600	TIFY2A	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.97	1609313_at	CF403611	similar to 2-oxo acid dehydrogenase, lipoyl-binding site	-	6e-2	At4g22320	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.97	1618498_at	CB008237	hypothetical protein LOC100255416	-	7e-6	At5g01980	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.98	1611783_at	BQ792690	hypothetical protein LOC100262520	-	1e+0	At2g43570	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.97	1616447_at	BQ792485	hypothetical protein LOC100242721	-	5e+0	At5g25210	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.97	1609604_at	CF513913	hypothetical protein LOC100264326	-	2e-3	At1g34780	ATAPRL4 (APR-like 4)	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.97	1619413_at	CB344818	-	-	7e-6	At1g64850	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.97	1606924_a_at	CF518716	similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase	-	8e-86	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.97	1621021_at	CF208345	hypothetical protein LOC100249161	-	2e-1	At5g56610	dual specificity protein phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.97	1621964_at	CF207985	hypothetical protein LOC100259817	-	2e-1	At3g44950	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.97	1612995_at	CD012259	-	-	4e-18	At3g13340	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.96	1619524_at	CF517397	-	-	6e-2	At5g13240	transcription regulator	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.97	1621040_at	BQ799491	hypothetical protein LOC100252271	-	1e-1	At1g31750	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.98	1612817_at	CB002820	hypothetical protein LOC100267132	-	3e-1	At3g62330	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.97	1615154_at	CF209662	hypothetical protein LOC100251043	-	8e-6	At3g09085	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.96	1622461_at	CF207190	hypothetical protein LOC100265048	-	3e-28	At5g53570	RabGAP/TBC domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
1.9	87.2	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
1.9	87.2	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
1.9	87.2	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147697	Vitis vinifera 'Cabernet sauvignon' mock inoculateds at 4 h post inoculation	26
1.8	86.0	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53
1.7	84.7	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
1.7	84.7	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
1.7	84.7	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
1.7	84.7	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41
1.7	84.7	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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