Co-expression analysis

Gene ID	1616169_at
Gene name	hypothetical protein LOC100244482
Homology with Arabidopsis	Similar to At1g72680: cinnamyl-alcohol dehydrogenase, putative (HF=2e-56)
Module size	13 genes
NF	0.25
%ile	35.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	0.95	1616169_at	CD802101	hypothetical protein LOC100244482	-	2e-56	At1g72680	cinnamyl-alcohol dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1616691_at	CD715631	similar to phosphatidylserine decarboxylase	-	1e-29	At5g57190	PSD2 (phosphatidylserine decarboxylase 2)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.97	1613120_at	CF404918	hypothetical LOC100248029	-	5e-3	At1g18810	phytochrome kinase substrate-related	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.97	1607094_at	CD800565	similar to 30S ribosomal protein S11, putative	-	3e+0	At2g29700	ATPH1 (ARABIDOPSIS THALIANA PLECKSTRIN HOMOLOGUE 1)	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.97	1621866_at	CF414716	similar to Putative autophagy-related protein 12	-	8e-33	At1g54210	ATG12A (AUTOPHAGY 12 A)	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.98	1608047_at	CF405221	hypothetical protein LOC100267805	-	1e-5	At3g10260	reticulon family protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.97	1621716_at	BQ792788	hypothetical protein LOC100261303	-	4e+0	At2g42395	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1607477_at	CB968954	hypothetical protein LOC100247294	-	2e-13	At5g66010	RNA binding / nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1622662_at	CF510959	hypothetical protein LOC100249169	-	1e-47	At5g23670	LCB2	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1610836_at	CF208642	hypothetical protein LOC100257386	-	5e-10	At4g16760	ACX1 (ACYL-COA OXIDASE 1)	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.96	1614694_at	CF209205	hypothetical protein LOC100253296	-	2e+0	At5g02620	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.97	1614995_at	BQ796323	hypothetical protein LOC100267574	-	4e-10	At4g04720	CPK21	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.97	1622699_at	CB007214	hypothetical protein LOC100247473	-	1e-4	At4g40000	NOL1/NOP2/sun family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	93.4	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.2	89.9	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
2.2	89.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.1	89.1	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.0	88.2	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.9	87.2	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
1.8	86.0	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.8	86.0	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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