Co-expression analysis

Gene ID 1616126_at
Gene name
Homology with ArabidopsisSimilar to At2g38140: PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4) (HF=8e-11)
Module size 8 genes
NF 0.73
%ile 95.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6384.30.951616126_atCF203840.1--8e-11At2g38140PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4)O.I.H.G.S.X.
0.8093.60.961614054_atCF206745.1--4e-47At2g27960CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)O.I.H.G.S.X.
0.8093.60.971616230_x_atCF202354.1--2e+1At5g43510-O.I.H.G.S.X.
0.7792.30.961615753_atCF207576--2e-11At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.7591.30.961618907_x_atCF202612.1--4e+0At5g17470calmodulin-related protein, putativeO.I.H.G.S.X.
0.7189.50.961608322_x_atCF205688.1--7e-1At5g10890myosin heavy chain-relatedO.I.H.G.S.X.
0.6183.20.961609907_x_atCF201896.1--8e+0At5g50345-O.I.H.G.S.X.
0.5577.30.961609380_x_atCF203033.1--8e-10At5g38410ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.893.4GSM436360Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM436354Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436363Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436355Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436368Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436371Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM436380Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM147695Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation24Link to GEO
2.189.1GSM436359Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM436379Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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