Co-expression analysis

Gene ID	1616112_at
Gene name	hypothetical protein LOC100264343
Homology with Arabidopsis	Similar to At5g47010: LBA1 (LOW-LEVEL BETA-AMYLASE 1) (HF=6e-73)
Module size	6 genes
NF	0.52
%ile	77.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	83.2	0.95	1616112_at	CF512953	hypothetical protein LOC100264343	-	6e-73	At5g47010	LBA1 (LOW-LEVEL BETA-AMYLASE 1)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1607858_at	CD719873	hypothetical protein LOC100249628	-	1e-77	At4g10730	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1615136_at	CF206458.1	hypothetical protein LOC100255051	-	1e-68	At1g10290	ADL6 (DYNAMIN-LIKE PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.96	1617690_at	CA811276	hypothetical protein LOC100241678	-	4e+0	At5g01810	CIPK15 (CBL-INTERACTING PROTEIN KINASE 15)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1617653_at	CA818371	hypothetical protein LOC100260671	-	5e-2	At4g39280	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.97	1609415_at	CA817605	hypothetical protein LOC100254309	-	2e-62	At2g01600	epsin N-terminal homology (ENTH) domain-containing protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.5	91.9	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.1	89.1	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.1	89.1	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.0	88.2	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
1.9	87.2	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM147673	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	2
1.9	87.2	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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