Co-expression analysis

Gene ID 1616102_at
Gene name
Homology with ArabidopsisSimilar to At3g22570: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (HF=3e+0)
Module size 7 genes
NF 0.40
%ile 60.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6384.30.931616102_atCF209146--3e+0At3g22570protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.5779.80.951617317_atCF414349hypothetical protein LOC100257501-1e+0At5g08240unknown proteinO.I.H.G.S.X.
0.4767.70.941609876_atCF513238hypothetical LOC100254650-4e-4At2g29750UGT71C1 (UDP-GLUCOSYL TRANSFERASE 71C1)O.I.H.G.S.X.
0.4057.70.971616361_atCF208677hypothetical protein LOC100243943-1e+0At3g32100unknown proteinO.I.H.G.S.X.
0.3650.70.971606628_atCD801290hypothetical protein LOC100262458-9e-13At1g76090SMT3 (STEROL METHYLTRANSFERASE 3)O.I.H.G.S.X.
0.2124.00.961607749_atCF516612hypothetical protein LOC100247285-4e+0At3g59490unknown proteinO.I.H.G.S.X.
0.2022.40.961608714_atCF208363hypothetical protein LOC100262262-5e-1At4g25810XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.399.2GSM436408V. riparia (VR, PI588259) LD, 15h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
5.898.6GSM436425V. riparia (VR, PI588259) SD, 13h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
4.897.8GSM436424V. riparia (VR, PI588259) SD, 13h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
4.897.8GSM436426V. riparia (VR, PI588259) SD, 13h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.796.2GSM436369Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM436366Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436407V. riparia (VR, PI588259) LD, 15h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM147730Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation59Link to GEO
2.189.1GSM147743Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation72Link to GEO
2.088.2GSM436414V. riparia (VR, PI588259) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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