CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1616023_at

Gene name hypothetical protein LOC100252512
Homology with Arabidopsis Similar to At1g50140: ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (HF=1e-38)

Module size 6 genes

NF 0.52

%ile 77.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 93.6 0.98 1616023_at CB979152 hypothetical protein LOC100252512 - 1e-38 At1g50140 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding O.I. H.G. S.X.
0.57 79.8 0.98 1615727_at CF205417.1 hypothetical protein LOC100261981 - 9e-2 At4g31470 pathogenesis-related protein, putative O.I. H.G. S.X.
0.55 77.3 0.98 1607312_at CF511987 hypothetical protein LOC100249902 - 5e+0 At3g12370 ribosomal protein L10 family protein O.I. H.G. S.X.
0.44 64.1 0.98 1619028_at CF205704.1 hypothetical protein LOC100248919 - 3e-26 At3g60620 phosphatidate cytidylyltransferase family protein O.I. H.G. S.X.
0.44 64.1 0.98 1608770_at CF211789 - - 6e-21 At3g60620 phosphatidate cytidylyltransferase family protein O.I. H.G. S.X.
0.27 34.0 0.98 1615943_at CB971749 hypothetical protein LOC100266273 - 5e-14 At1g51980 mitochondrial processing peptidase alpha subunit, putative O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.80	93.6	0.98	1616023_at	CB979152	hypothetical protein LOC100252512	-	1e-38	At1g50140	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	O.I.	H.G.	S.X.
0.57	79.8	0.98	1615727_at	CF205417.1	hypothetical protein LOC100261981	-	9e-2	At4g31470	pathogenesis-related protein, putative	O.I.	H.G.	S.X.
0.55	77.3	0.98	1607312_at	CF511987	hypothetical protein LOC100249902	-	5e+0	At3g12370	ribosomal protein L10 family protein	O.I.	H.G.	S.X.
0.44	64.1	0.98	1619028_at	CF205704.1	hypothetical protein LOC100248919	-	3e-26	At3g60620	phosphatidate cytidylyltransferase family protein	O.I.	H.G.	S.X.
0.44	64.1	0.98	1608770_at	CF211789	-	-	6e-21	At3g60620	phosphatidate cytidylyltransferase family protein	O.I.	H.G.	S.X.
0.27	34.0	0.98	1615943_at	CB971749	hypothetical protein LOC100266273	-	5e-14	At1g51980	mitochondrial processing peptidase alpha subunit, putative	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.80	93.6	0.97	1608879_s_at	CF204246.1	hypothetical protein LOC100265837	-	2e-1	At2g20920	unknown protein	O.I.	H.G.	S.X.
0.73	90.8	0.97	1617761_at	CB005291	-	-	6e-4	At1g59660	nucleoporin family protein	O.I.	H.G.	S.X.
0.67	87.9	0.98	1611430_at	CB975310	-	-	4e+0	At3g52790	peptidoglycan-binding LysM domain-containing protein	O.I.	H.G.	S.X.
0.63	84.3	0.97	1619172_at	CD799360	hypothetical protein LOC100264449	-	1e-85	At1g50380	prolyl oligopeptidase family protein	O.I.	H.G.	S.X.
0.60	81.9	0.98	1614958_at	CB347627	hypothetical protein LOC100241674	-	2e-6	At5g13050	5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE)	O.I.	H.G.	S.X.
0.60	81.9	0.98	1622086_at	CF207289	hypothetical protein LOC100265288	-	1e-1	At2g20480	unknown protein	O.I.	H.G.	S.X.
0.50	72.7	0.95	1608595_at	CF413802	-	-	1e+0	At4g04580	myb family transcription factor	O.I.	H.G.	S.X.
0.50	72.7	0.97	1611607_at	CF201459.1	-	-	4e-66	At1g13060	PBE1	O.I.	H.G.	S.X.
0.50	72.7	0.98	1609080_at	BQ797210	hypothetical protein LOC100265018	-	9e-21	At5g54440	unknown protein	O.I.	H.G.	S.X.
0.48	68.8	0.97	1620211_at	CF513911	hypothetical protein LOC100261483	-	1e+0	At3g07565	DNA binding	O.I.	H.G.	S.X.
0.47	67.7	0.97	1608922_at	CF215634	similar to cytidine/deoxycytidylate deaminase family protein	-	3e-43	At4g20960	cytidine/deoxycytidylate deaminase family protein	O.I.	H.G.	S.X.
0.44	64.1	0.96	1617858_at	CF206233.1	-	-	5e-12	At4g17360	formyltetrahydrofolate deformylase/ hydroxymethyl-, formyl- and related transferase/ methyltransferase	O.I.	H.G.	S.X.
0.43	61.5	0.97	1620802_at	CB976446	similar to putative pyruvate dehydrogenase E1 alpha subunit	-	3e-89	At1g01090	PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA)	O.I.	H.G.	S.X.
0.40	57.7	0.93	1622197_at	CF403402	hypothetical protein LOC100265428	-	2e-1	At5g14600	tRNA (adenine-N1-)-methyltransferase	O.I.	H.G.	S.X.
0.40	57.7	0.97	1608179_at	CB005049	hypothetical protein LOC100260954	-	1e+0	At5g26700	germin-like protein, putative	O.I.	H.G.	S.X.
0.40	57.7	0.97	1609245_at	CD714855	hypothetical protein LOC100249819	-	1e-6	At4g29430	rps15ae (ribosomal protein S15A E)	O.I.	H.G.	S.X.
0.40	57.7	0.98	1619780_at	BQ793998	hypothetical protein LOC100261596	-	8e-25	At2g26930	ATCDPMEK (4-(CYTIDINE 5'-PHOSPHO)-2-C-METHYL-D-ERITHRITOL KINASE)	O.I.	H.G.	S.X.
0.38	53.6	0.96	1622777_at	CB008059	hypothetical protein LOC100244900	-	4e+0	At3g61200	thioesterase family protein	O.I.	H.G.	S.X.
0.38	53.6	0.97	1611814_at	BQ794689	hypothetical protein LOC100245809	-	2e-6	At3g26380	glycosyl hydrolase family protein 27 / alpha-galactosidase family protein / melibiase family protein	O.I.	H.G.	S.X.
0.36	50.7	0.96	1614982_at	CF211066	hypothetical protein LOC100241648	-	4e-69	At1g74910	ADP-glucose pyrophosphorylase family protein	O.I.	H.G.	S.X.
0.36	50.7	0.96	1618934_at	CB343172	hypothetical protein LOC100264485	-	3e-20	At5g23890	-	O.I.	H.G.	S.X.
0.36	50.7	0.98	1607995_at	CB007776	hypothetical protein LOC100266278	-	9e-29	At2g07360	SH3 domain-containing protein	O.I.	H.G.	S.X.
0.35	48.5	0.96	1622242_s_at	CF206374.1	hypothetical protein LOC100264895	-	1e+0	At5g57565	protein kinase family protein	O.I.	H.G.	S.X.
0.33	45.7	0.96	1617613_at	BQ798788	similar to transaldolase ToTAL2	-	4e-54	At1g12230	transaldolase, putative	O.I.	H.G.	S.X.
0.33	45.7	0.97	1619382_at	CA817878	hypothetical protein LOC100251065	-	2e-27	At1g48240	ATNPSN12	O.I.	H.G.	S.X.
0.33	45.7	0.97	1611369_at	CA809038	hypothetical protein LOC100253653	-	6e-30	At1g14410	WHY1 (WHIRLY 1)	O.I.	H.G.	S.X.
0.33	45.7	0.98	1616843_at	CF606887	hypothetical protein LOC100252068	-	7e-17	At4g18460	D-Tyr-tRNA(Tyr) deacylase family protein	O.I.	H.G.	S.X.
0.33	45.7	0.98	1618390_at	CF603650	hypothetical protein LOC100243279	-	1e+0	At3g27890	NQR (NADPH:QUINONE OXIDOREDUCTASE)	O.I.	H.G.	S.X.
0.33	45.7	0.98	1613951_at	CF404624	hypothetical protein LOC100242676	-	1e-13	At3g06350	MEE32 (MATERNAL EFFECT EMBRYO ARREST 32)	O.I.	H.G.	S.X.
0.32	43.1	0.95	1622659_at	CF405929	hypothetical protein LOC100250457	-	3e-11	At3g12050	Aha1 domain-containing protein	O.I.	H.G.	S.X.
0.31	41.3	0.97	1615531_at	CB347122	hypothetical protein LOC100248795	-	8e-20	At1g77260	dehydration-responsive protein-related	O.I.	H.G.	S.X.
0.30	39.4	0.97	1611474_at	CD718512	hypothetical protein LOC100240955	-	1e-1	At3g27340	unknown protein	O.I.	H.G.	S.X.
0.29	37.7	0.97	1617318_at	CF209178	hypothetical protein LOC100258316	-	4e-12	At5g23300	PYRD (pyrimidine d)	O.I.	H.G.	S.X.
0.29	37.7	0.97	1620957_at	CB969381	hypothetical protein LOC100244062	-	8e-21	At2g43400	ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase)	O.I.	H.G.	S.X.
0.29	37.7	0.98	1607166_at	CF517014	hypothetical protein LOC100254901	-	2e+1	Atmg00730	-	O.I.	H.G.	S.X.
0.28	37.7	0.93	1611518_at	CD797985	-	-	1e+1	At5g17340	unknown protein	O.I.	H.G.	S.X.
0.27	34.0	0.97	1614356_at	BQ797477	-	-	6e-1	At1g07880	ATMPK13	O.I.	H.G.	S.X.
0.27	34.0	0.97	1617512_at	CB971930	-	-	2e+1	At5g11680	unknown protein	O.I.	H.G.	S.X.
0.27	34.0	0.97	1616744_at	CD004223	hypothetical protein LOC100247994	-	1e+0	At3g21570	unknown protein	O.I.	H.G.	S.X.
0.26	32.0	0.95	1611307_at	CF405762	-	-	3e+0	At3g25400	-	O.I.	H.G.	S.X.
0.26	32.0	0.97	1621564_at	CB971699	-	-	6e-4	At1g77230	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.
0.26	32.0	0.94	1619432_at	CD802043	-	-	7e-5	At3g58140	phenylalanyl-tRNA synthetase class IIc family protein	O.I.	H.G.	S.X.
0.25	30.5	0.96	1616903_at	CB970855	hypothetical protein LOC100255301	-	3e-5	At5g62575	unknown protein	O.I.	H.G.	S.X.
0.25	30.5	0.97	1616563_s_at	CB971889	hypothetical protein LOC100246701	-	3e+1	At5g55565	-	O.I.	H.G.	S.X.
0.25	30.5	0.98	1620873_at	CB339891	hypothetical protein LOC100247687	-	1e-15	At2g37660	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.3 99.4 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.3 97.2 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
4.0 96.7 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
3.4 95.5 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
3.2 94.9 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
3.1 94.6 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
3.1 94.6 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52
2.8 93.4 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
2.7 93.0 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
2.4 91.3 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
8.3	99.4	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.3	97.2	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
4.0	96.7	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
3.4	95.5	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
3.2	94.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
3.1	94.6	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
3.1	94.6	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.8	93.4	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.7	93.0	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.4	91.3	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

Back to the CoP portal site

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Gene ID	1616023_at
Gene name	hypothetical protein LOC100252512
Homology with Arabidopsis	Similar to At1g50140: ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (HF=1e-38)
Module size	6 genes
NF	0.52
%ile	77.3

Co-expression analysis

Gene ID 1616023_at Gene name hypothetical protein LOC100252512 Homology with ArabidopsisSimilar to At1g50140: ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (HF=1e-38) Module size 6 genes NF 0.52 %ile 77.3

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID 1616023_at

Gene name hypothetical protein LOC100252512
Homology with Arabidopsis Similar to At1g50140: ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (HF=1e-38)

Module size 6 genes

NF 0.52

%ile 77.3

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays