CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1616023_at

Gene name hypothetical protein LOC100252512
Homology with Arabidopsis Similar to At1g50140: ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (HF=1e-38)

Module size 6 genes

NF 0.52

%ile 77.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 93.6 0.98 1616023_at CB979152 hypothetical protein LOC100252512 - 1e-38 At1g50140 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding O.I. H.G. S.X.
0.57 79.8 0.98 1615727_at CF205417.1 hypothetical protein LOC100261981 - 9e-2 At4g31470 pathogenesis-related protein, putative O.I. H.G. S.X.
0.55 77.3 0.98 1607312_at CF511987 hypothetical protein LOC100249902 - 5e+0 At3g12370 ribosomal protein L10 family protein O.I. H.G. S.X.
0.44 64.1 0.98 1619028_at CF205704.1 hypothetical protein LOC100248919 - 3e-26 At3g60620 phosphatidate cytidylyltransferase family protein O.I. H.G. S.X.
0.44 64.1 0.98 1608770_at CF211789 - - 6e-21 At3g60620 phosphatidate cytidylyltransferase family protein O.I. H.G. S.X.
0.27 34.0 0.98 1615943_at CB971749 hypothetical protein LOC100266273 - 5e-14 At1g51980 mitochondrial processing peptidase alpha subunit, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.3 99.4 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.3 97.2 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
4.0 96.7 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
3.4 95.5 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
3.2 94.9 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
3.1 94.6 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
3.1 94.6 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52
2.8 93.4 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
2.7 93.0 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
2.4 91.3 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64

Inter-species module comparison

A co-expression module including the maize gene, Zm.13693.1.A1_at, orthologous to the query gene, 1616023_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.52 67.3 Zm.13693.1.A1_at At1g50140 - - 6e-54 At4g02480 AAA-type ATPase family protein O.I. H.G. S.X.
0.67 85.8 ZmAffx.58.1.A1_at At1g50140 - - 3e+0 At4g04840 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein O.I. H.G. S.X.
0.31 31.6 Zm.1699.1.S1_at At1g50140 - - 5e-45 At3g20290 ATEHD1 (EPS15 HOMOLOGY DOMAIN 1) O.I. H.G. S.X.
0.15 8.6 ZmAffx.46.1.A1_at At1g50140 hypothetical protein LOC100273468 - 3e+0 At5g62260 DNA binding O.I. H.G. S.X.
0.11 5.3 Zm.13062.1.A1_at At1g50140 Hypothetical protein LOC100193834 - 2e-1 At4g33750 - O.I. H.G. S.X.
0.11 5.3 Zm.6172.1.S1_at At1g50140 protein disulfide isomerase - 2e-9 At1g07960 ATPDIL5-1 (PDI-like 5-1) O.I. H.G. S.X.
0.07 2.9 Zm.5396.1.S1_at At1g50140 Hypothetical protein LOC100216913 - 8e-5 At1g53645 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum

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