Co-expression analysis

Gene ID	1616023_at
Gene name	hypothetical protein LOC100252512
Homology with Arabidopsis	Similar to At1g50140: ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (HF=1e-38)
Module size	6 genes
NF	0.52
%ile	77.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	93.6	0.98	1616023_at	CB979152	hypothetical protein LOC100252512	-	1e-38	At1g50140	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.98	1615727_at	CF205417.1	hypothetical protein LOC100261981	-	9e-2	At4g31470	pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.98	1607312_at	CF511987	hypothetical protein LOC100249902	-	5e+0	At3g12370	ribosomal protein L10 family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1619028_at	CF205704.1	hypothetical protein LOC100248919	-	3e-26	At3g60620	phosphatidate cytidylyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1608770_at	CF211789	-	-	6e-21	At3g60620	phosphatidate cytidylyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.98	1615943_at	CB971749	hypothetical protein LOC100266273	-	5e-14	At1g51980	mitochondrial processing peptidase alpha subunit, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.3	99.4	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.3	97.2	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
4.0	96.7	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
3.4	95.5	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
3.2	94.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
3.1	94.6	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
3.1	94.6	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.8	93.4	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.7	93.0	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.4	91.3	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64

Inter-species module comparison

A co-expression module including the barley gene, Contig9080_s_at, orthologous to the query gene, 1616023_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	91.2	Contig9080_s_at	At1g50140	-	-	5e-14	At1g50140	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig416_x_at	At1g50140	-	-	5e-29	At4g24190	SHD (SHEPHERD)	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig13788_at	At1g50140	-	-	3e+0	At3g18215	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	Contig12594_at	At1g50140	-	-	3e+0	At5g11990	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig4475_at	At1g50140	-	-	1e-1	At1g71840	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig5749_at	At1g50140	-	-	6e-16	At2g25310	carbohydrate binding	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig6890_at	At1g50140	-	-	4e+0	At5g34581	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig9332_at	At1g50140	-	-	6e+0	At3g01470	ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig8943_at	At1g50140	-	-	1e-6	At1g75990	26S proteasome regulatory subunit S3, putative (RPN3)	O.I.	H.G.	S.X.	Please select
0.23	26.1	rbags1e22_s_at	At1g50140	-	-	3e-1	At3g56360	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig9785_at	At1g50140	-	-	9e-4	At4g25620	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig10818_at	At1g50140	-	-	1e-2	At1g47970	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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