CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1616023_at

Gene name hypothetical protein LOC100252512
Homology with Arabidopsis Similar to At1g50140: ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding (HF=1e-38)

Module size 6 genes

NF 0.52

%ile 77.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 93.6 0.98 1616023_at CB979152 hypothetical protein LOC100252512 - 1e-38 At1g50140 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding O.I. H.G. S.X.
0.57 79.8 0.98 1615727_at CF205417.1 hypothetical protein LOC100261981 - 9e-2 At4g31470 pathogenesis-related protein, putative O.I. H.G. S.X.
0.55 77.3 0.98 1607312_at CF511987 hypothetical protein LOC100249902 - 5e+0 At3g12370 ribosomal protein L10 family protein O.I. H.G. S.X.
0.44 64.1 0.98 1619028_at CF205704.1 hypothetical protein LOC100248919 - 3e-26 At3g60620 phosphatidate cytidylyltransferase family protein O.I. H.G. S.X.
0.44 64.1 0.98 1608770_at CF211789 - - 6e-21 At3g60620 phosphatidate cytidylyltransferase family protein O.I. H.G. S.X.
0.27 34.0 0.98 1615943_at CB971749 hypothetical protein LOC100266273 - 5e-14 At1g51980 mitochondrial processing peptidase alpha subunit, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.3 99.4 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.3 97.2 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
4.0 96.7 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
3.4 95.5 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
3.2 94.9 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
3.1 94.6 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
3.1 94.6 GSM147723 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 52
2.8 93.4 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
2.7 93.0 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
2.4 91.3 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g50140, orthologous to the query gene, 1616023_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.24 20.7 At1g50140 841436 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;BOMFPAV O.I. H.G. S.X.
0.60 75.7 At5g08500 830749 transmembrane CLPTM1 family protein F:unknown;P:biological_process unknown;C:unknown;MOFP O.I. H.G. S.X.
0.50 65.3 At5g13310 831172 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFP O.I. H.G. S.X.
0.40 50.8 At5g12290 831104 DGS1 (DGD1 SUPPRESSOR 1) Encodes a mitochondrial outer membrane protein, involved in galactoglycerolipid biosynthesis. The dgd1 mutant phenotype is suppressed in the dgs1 mutant background. O.I. H.G. S.X.
0.35 41.6 At1g72740 843606 DNA-binding family protein / histone H1/H5 family protein F:transcription factor activity;P:nucleosome assembly, regulation of transcription;C:nucleus;PMFO O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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