Co-expression analysis

Gene ID	1615870_at
Gene name
Homology with Arabidopsis	Similar to At4g32610: unknown protein (HF=2e+0)
Module size	44 genes
NF	0.39
%ile	57.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.3	0.96	1615870_at	CF512659	-	-	2e+0	At4g32610	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.98	1608674_at	CB978869	-	-	2e-1	At1g67870	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.98	1609115_at	BQ794176	hypothetical LOC100248456	-	7e-1	At2g35410	33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.98	1612947_at	CF604192	hypothetical protein LOC100258345	-	5e-45	At3g19640	magnesium transporter CorA-like family protein (MRS2-3)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.98	1619919_at	CB913607	-	-	4e-1	At5g48880	PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2)	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.97	1616859_at	CF514086	hypothetical protein LOC100245186	-	4e+0	At5g67490	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.97	1613777_at	CF404767	-	-	1e+0	At3g04430	anac049 (Arabidopsis NAC domain containing protein 49)	O.I.	H.G.	S.X.	Please select
0.51	73.2	0.98	1612643_at	CF512573	hypothetical protein LOC100263481	-	1e-1	At1g17460	TRFL3 (TRF-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.97	1613895_at	CF513745	hypothetical protein LOC100241488	-	1e-4	At1g11520	pliceosome associated protein-related	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.98	1614667_at	CB976778	hypothetical protein LOC100243706	-	4e-6	At2g44200	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1622033_at	CB917346	hypothetical protein LOC100251869	-	1e-25	At3g11130	clathrin heavy chain, putative	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1618199_at	CD802229	hypothetical protein LOC100247128	-	7e-8	At5g15790	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.97	1611143_at	CF372549	hypothetical protein LOC100266764	-	4e+0	At1g14490	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.98	1609777_at	CF519086	hypothetical protein LOC100257098	-	5e+0	At5g44973	-	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.97	1609847_at	CB004110	hypothetical protein LOC100256367	-	1e-4	At3g63220	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.98	1606430_at	CF510781	hypothetical protein LOC100251243	-	1e-33	At1g79000	HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1)	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.97	1618859_at	CF512679	hypothetical protein LOC100245979	-	2e+0	At5g09805	IDL3 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 3)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1619286_at	CF207544	hypothetical protein LOC100260456	-	1e+1	At5g65120	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1611837_at	BQ792074	hypothetical protein LOC100244623	-	3e-1	At5g61500	ATG3	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1615347_at	CF518500	hypothetical protein LOC100243052	-	2e-20	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.98	1617581_at	CF514948	-	-	4e+0	At4g07940	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	1619145_s_at	CB969125	hypothetical protein LOC100250496	-	6e-36	At2g27050	EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1615275_at	BQ797243	hypothetical protein LOC100241984	-	3e+0	At4g02733	-	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1614966_at	BQ796346	similar to pumilio domain-containing protein PPD1	-	1e-9	At2g29190	APUM2 (Arabidopsis Pumilio 2)	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.98	1617476_at	CB345793	hypothetical protein LOC100246888	-	8e-12	At2g42230	tubulin-specific chaperone C-related	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.97	1611177_at	CF518669	hypothetical protein LOC100263874	-	2e-8	At1g60200	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.98	1616867_at	CF405655	hypothetical protein LOC100254223	-	2e-17	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.98	1608653_at	CB975644	hypothetical protein LOC100263217	-	5e+0	At4g15020	DNA binding / protein dimerization	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.98	1614710_at	CF404864	-	-	1e-1	At1g53625	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1613738_at	CB343644	hypothetical protein LOC100265879	-	6e-1	At3g25420	scpl21 (serine carboxypeptidase-like 21)	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.98	1609716_at	CA810704	hypothetical protein LOC100265922	-	3e-1	At2g21210	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.97	1606481_at	CF403961	hypothetical protein LOC100265434	-	2e-1	At5g30500	galactinol synthase, putative	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.98	1617655_at	CB348593	hypothetical protein LOC100262391	-	5e-10	At3g16620	ATTOC120	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.98	1617647_at	BQ796384	hypothetical protein LOC100247282 /// hypothetical protein LOC100248797	-	7e-2	At1g54020	myrosinase-associated protein, putative	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.98	1606549_at	CD800990	hypothetical protein LOC100243365	-	2e-1	At3g16700	fumarylacetoacetate hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.98	1620599_at	CF414825	hypothetical protein LOC100246051 /// hypothetical protein LOC100256250	-	5e+0	At5g20290	40S ribosomal protein S8 (RPS8A)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.98	1615901_at	CF405787	hypothetical protein LOC100248277	-	5e+0	At4g13075	RALFL30 (RALF-LIKE 30)	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.98	1617406_s_at	CF415339	hypothetical protein LOC100266010	-	2e-8	At3g07220	transcriptional activator, putative	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.98	1614250_at	CB968932	hypothetical protein LOC100265946	-	2e+0	At3g20770	EIN3 (ETHYLENE-INSENSITIVE3)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.96	1606723_at	CB346152	hypothetical protein LOC100260425	-	1e+0	At4g12130	aminomethyltransferase	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.98	1619282_at	CB971606	hypothetical protein LOC100252267	-	5e-75	At4g21710	NRPB2	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.98	1613129_at	CB970410	hypothetical protein LOC100266068	-	2e-13	At4g17330	ATG2484-1	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.98	1618562_at	CF512114	hypothetical protein LOC100258848	-	8e-3	At4g02450	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.98	1613582_at	CF204478.1	hypothetical protein LOC100261825	-	6e-12	At5g14170	CHC1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.2	89.9	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.8	86.0	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.7	84.7	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.7	84.7	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.6	83.3	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.5	81.7	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.5	81.7	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.5	81.7	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.4	79.9	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.4	79.9	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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