CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1615850_s_at

Gene name hypothetical protein LOC100258165
Homology with Arabidopsis Similar to At5g05110: cysteine protease inhibitor, putative / cystatin, putative (HF=6e+0)

Module size 6 genes

NF 0.36

%ile 52.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.97 1615850_s_at BQ796206 hypothetical protein LOC100258165 - 6e+0 At5g05110 cysteine protease inhibitor, putative / cystatin, putative O.I. H.G. S.X.
0.50 72.7 0.98 1610020_at BQ799829 hypothetical protein LOC100260445 - 2e-114 At2g27450 NLP1 (NITRILASE-LIKE PROTEIN 1) O.I. H.G. S.X.
0.40 57.7 0.97 1618957_at CF603287 hypothetical protein LOC100263857 - 6e-27 At3g46200 aTNUDT9 (Arabidopsis thaliana Nudix hydrolase homolog 9) O.I. H.G. S.X.
0.40 57.7 0.98 1621917_at CF208474 hypothetical protein LOC100244091 - 1e-20 At3g03420 Ku70-binding family protein O.I. H.G. S.X.
0.29 37.7 0.97 1619232_at CA817187 hypothetical protein LOC100248696 - 6e-6 At3g06420 ATG8H (autophagy 8h) O.I. H.G. S.X.
0.14 14.4 0.97 1610077_at CB919847 hypothetical protein LOC100264401 - 4e-38 At1g77710 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.8	0.97	1615850_s_at	BQ796206	hypothetical protein LOC100258165	-	6e+0	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.
0.50	72.7	0.98	1610020_at	BQ799829	hypothetical protein LOC100260445	-	2e-114	At2g27450	NLP1 (NITRILASE-LIKE PROTEIN 1)	O.I.	H.G.	S.X.
0.40	57.7	0.97	1618957_at	CF603287	hypothetical protein LOC100263857	-	6e-27	At3g46200	aTNUDT9 (Arabidopsis thaliana Nudix hydrolase homolog 9)	O.I.	H.G.	S.X.
0.40	57.7	0.98	1621917_at	CF208474	hypothetical protein LOC100244091	-	1e-20	At3g03420	Ku70-binding family protein	O.I.	H.G.	S.X.
0.29	37.7	0.97	1619232_at	CA817187	hypothetical protein LOC100248696	-	6e-6	At3g06420	ATG8H (autophagy 8h)	O.I.	H.G.	S.X.
0.14	14.4	0.97	1610077_at	CB919847	hypothetical protein LOC100264401	-	4e-38	At1g77710	-	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.50	72.7	0.96	1612535_s_at	CB348535	hypothetical protein LOC100246597	-	4e-3	At3g55040	GSTL2	O.I.	H.G.	S.X.
0.50	72.7	0.97	1618050_s_at	BQ792637	hypothetical protein LOC100259485	-	1e-2	At3g01170	structural constituent of ribosome	O.I.	H.G.	S.X.
0.46	66.5	0.96	1614508_at	CB008806	hypothetical protein LOC100257568	-	1e-10	At1g52600	signal peptidase, putative	O.I.	H.G.	S.X.
0.44	64.1	0.97	1619505_a_at	CB981292	hypothetical protein LOC100250945	-	6e-25	At2g01350	QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE)	O.I.	H.G.	S.X.
0.44	64.1	0.97	1619462_at	CB341985	hypothetical protein LOC100251802	-	6e-21	At4g08790	nitrilase, putative	O.I.	H.G.	S.X.
0.43	61.5	0.95	1607884_at	CF214467	-	-	3e-10	At5g49015	Expressed protein	O.I.	H.G.	S.X.
0.43	61.5	0.97	1621870_at	CF414005	hypothetical protein LOC100245239	-	9e-8	At3g20510	unknown protein	O.I.	H.G.	S.X.
0.36	50.7	0.94	1618640_at	CB912272	hypothetical protein LOC100263256	-	5e+0	Atcg01310	-	O.I.	H.G.	S.X.
0.36	50.7	0.95	1612505_at	BQ800168	-	-	2e-5	At3g62210	EDA32 (embryo sac development arrest 32)	O.I.	H.G.	S.X.
0.36	50.7	0.98	1606757_at	CF215952	hypothetical protein LOC100262374	-	4e+0	At3g43950	phosphotransferase, alcohol group as acceptor	O.I.	H.G.	S.X.
0.35	48.5	0.95	1614428_at	BQ799174	hypothetical protein LOC100266723	-	4e-135	At4g23100	GSH1 (GLUTAMATE-CYSTEINE LIGASE)	O.I.	H.G.	S.X.
0.33	45.7	0.96	1609536_at	CB974631	hypothetical protein LOC100247006	-	2e-2	At5g03460	unknown protein	O.I.	H.G.	S.X.
0.31	41.3	0.97	1611001_at	CF204537.1	-	-	7e-12	At2g26600	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.
0.31	41.3	0.97	1621910_a_at	CB340746	-	-	1e-134	At5g14670	ATARFA1B (ADP-ribosylation factor A1B)	O.I.	H.G.	S.X.
0.30	39.4	0.96	1610099_at	BQ794282	hypothetical protein LOC100250035	-	5e-6	At5g50000	protein kinase, putative	O.I.	H.G.	S.X.
0.29	37.7	0.96	1616496_at	CB975515	-	-	3e-5	At4g23710	VAG2	O.I.	H.G.	S.X.
0.29	37.7	0.96	1619912_at	CB981956	hypothetical protein LOC100248672 /// hypothetical protein LOC100258262	-	6e-91	At1g29310	P-P-bond-hydrolysis-driven protein transmembrane transporter	O.I.	H.G.	S.X.
0.29	37.7	0.97	1609431_at	CB347616	hypothetical protein LOC100244166	-	3e-4	At5g18790	ribosomal protein L33 family protein	O.I.	H.G.	S.X.
0.29	37.7	0.97	1620251_at	CD009853	hypothetical protein LOC100249202	-	3e-2	At2g22080	unknown protein	O.I.	H.G.	S.X.
0.27	34.0	0.95	1613292_s_at	CD800861	similar to putative protein	-	3e+0	At2g27410	unknown protein	O.I.	H.G.	S.X.
0.27	34.0	0.97	1617472_at	CB970516	hypothetical protein LOC100262721	-	1e+0	At2g10930	unknown protein	O.I.	H.G.	S.X.
0.26	32.0	0.94	1613127_at	CF604632	hypothetical protein LOC100252080	-	1e-3	At5g50260	cysteine proteinase, putative	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.2 94.9 GSM147676 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 5
2.8 93.4 GSM147695 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation 24
2.6 92.5 GSM147677 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 6
2.4 91.3 GSM147742 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 71
2.2 89.9 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
2.1 89.1 GSM322366 genotype: Chardonnay - disease type: Healthy - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.1 89.1 GSM147694 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation 23
2.0 88.2 GSM147719 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 48
2.0 88.2 GSM147690 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation 19

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
3.2	94.9	GSM147676	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	5
2.8	93.4	GSM147695	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	24
2.6	92.5	GSM147677	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	6
2.4	91.3	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
2.2	89.9	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.1	89.1	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM147694	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	23
2.0	88.2	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
2.0	88.2	GSM147690	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	19

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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Gene ID	1615850_s_at
Gene name	hypothetical protein LOC100258165
Homology with Arabidopsis	Similar to At5g05110: cysteine protease inhibitor, putative / cystatin, putative (HF=6e+0)
Module size	6 genes
NF	0.36
%ile	52.8

Co-expression analysis

Gene ID 1615850_s_at Gene name hypothetical protein LOC100258165 Homology with ArabidopsisSimilar to At5g05110: cysteine protease inhibitor, putative / cystatin, putative (HF=6e+0) Module size 6 genes NF 0.36 %ile 52.8

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID 1615850_s_at

Gene name hypothetical protein LOC100258165
Homology with Arabidopsis Similar to At5g05110: cysteine protease inhibitor, putative / cystatin, putative (HF=6e+0)

Module size 6 genes

NF 0.36

%ile 52.8

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays