Co-expression analysis

Gene ID	1615850_s_at
Gene name	hypothetical protein LOC100258165
Homology with Arabidopsis	Similar to At5g05110: cysteine protease inhibitor, putative / cystatin, putative (HF=6e+0)
Module size	6 genes
NF	0.36
%ile	52.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.97	1615850_s_at	BQ796206	hypothetical protein LOC100258165	-	6e+0	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1610020_at	BQ799829	hypothetical protein LOC100260445	-	2e-114	At2g27450	NLP1 (NITRILASE-LIKE PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1618957_at	CF603287	hypothetical protein LOC100263857	-	6e-27	At3g46200	aTNUDT9 (Arabidopsis thaliana Nudix hydrolase homolog 9)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1621917_at	CF208474	hypothetical protein LOC100244091	-	1e-20	At3g03420	Ku70-binding family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.97	1619232_at	CA817187	hypothetical protein LOC100248696	-	6e-6	At3g06420	ATG8H (autophagy 8h)	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.97	1610077_at	CB919847	hypothetical protein LOC100264401	-	4e-38	At1g77710	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.9	GSM147676	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	5
2.8	93.4	GSM147695	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	24
2.6	92.5	GSM147677	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	6
2.4	91.3	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
2.2	89.9	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.1	89.1	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM147694	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	23
2.0	88.2	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
2.0	88.2	GSM147690	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	19

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.216470.1.S1_s_at, orthologous to the query gene, 1615850_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	PtpAffx.216470.1.S1_s_at	At5g05110	hypothetical protein	-	6e-24	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.145335.1.A1_at	At5g05110	hypothetical protein	-	4e+0	At4g15620	integral membrane family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.1941.1.S1_a_at	At5g05110	-	-	6e-1	At3g24800	PRT1 (PROTEOLYSIS 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	Ptp.4563.1.S1_at	At5g05110	hypothetical protein	-	2e-19	At4g39100	SHL1 (short life)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.117819.1.S1_at	At5g05110	hypothetical protein	-	2e-1	At4g02800	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.56274.1.S1_at	At5g05110	hypothetical protein	-	1e+0	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.200899.1.S1_at	At5g05110	hypothetical protein	-	2e-3	At4g14590	emb2739 (embryo defective 2739)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.151516.1.A1_at	At5g05110	hypothetical protein	-	2e-30	At3g13530	MAPKKK7	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage